BAC Information

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BAC

Clone NameMSMg01-405P11
Chromosome7 (Build37)
Map Location 148,706,285 - 148,706,637
singlet/doubletsinglet
Overlap geneChid1
Upstream geneOlfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4
Downstream geneAp2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405P11.T7 (MSMg01no405_p11.b1)MSMg01-405P11.TJ (MSMg01no405_p11.g1)
ACCAG504272AG504273
length757746
length of high quality
(start - end)		245 (75 - 319)353 (112 - 464)
definitionCHROMAT_FILE: MSMg01no405_p11.b1 PHD_FILE: MSMg01no405_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:07 2005CHROMAT_FILE: MSMg01no405_p11.g1 PHD_FILE: MSMg01no405_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGAGAGCGCG
GAANTCCTGGACATCCCGAGAACACAGAGAACCCTTTCTCAATAAATAAA
TAAATAAGCAAGCAAGCTTGCAAGCAAGCAAGCAACTAAACAGATATATA
AATGAATAGACTAGATTAAGTGGCTGGGTGTGTACCCACTTGCCTCTCAT
TCCAACACTTGGGAGGCAGAGGTAGATGGGTCTCTGAGTTCTAGACTAGC
CAGGGCAACAGTGAGACCCTGTCTCAAAATAAATAAATAAAATAATAAAA
TATAAAAATAAAAAAGTTACTTATAACCCAGTGTGGTGGCACACACTTGT
AATCTCGGCACCAAGGAACCTCGGACAAGGAGTGAGTTGTGAATTCAAGG
GCCTGGGCCATATAGTGAGACACTGTCTCAAAATCCTACTCCAGGGCTGG
AGGAATGGCTCAGCAGTTAAGAGTACTTACTATCTGCTCCTCCAGAAGTC
CAGAATTCAATTTCCAGCAACCACATGGTGGCTAACAATCATCTATAATG
GGATCTCATGGCCTCTTCTGTCTTGCGGGCATACATGCAAATACAGCACT
CATGGACATAAATAAATCTTTTCTTTTAAGCTGTACTAAAAACTTGCTTA
TTCCTCTGGAGACTTGGGGCTCCTTTCCTTCAGTTATTCTGTTAGGGGGT
TCCTTTTTATCTTGGGTCGCGGCGAAGTGGTTTTCACAACAGGTTTTTTC
CGCAATG

TCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTGTGTAGACTAGGTTACGTTTTAATG
TGTGGGGCCTGTGTGTGTAGTGAGGCTCCGTTCTATATGTTTTCTTCCTC
AGCTGACCAAACAGTCTTGCAGACCTAGGTGGAAGAGACAGCAAGGGGGT
CACAGACTTCCAGAAGGGCCTCCAGAATTGTGGTATCAGCTGCCTCTGCC
GGGTGCTCATTTCTGGATCTCTTGGTATACAGTGTTGGCTGGGGTGCTAT
AGCTAGGCGGAAACTTGGAGTGGACAGTTCAGAAACCTGTGGCAGGTTTT
GGTTCTGTAGAAGCTGCTCTCAGATTCTGGTCAGGCTTGGGGTGTCATAT
TTTGCAAAGGACCTCTCTGTCCAAGCATCTCCTCCCAAACTCCCAGTCCT
TTGCCTGAAGTGGATCTTATAAGCAAGCCAAGGTCAAGTCTGTCACTCAC
TTTGCAGTGACTGAGGCACATAGTTCACCTTATGCAGCCATGAGGAGAGT
GATTCTGGAGGGTACCCTTAGTGGTTTTAGGGGATGTATCTGCAGTGCCT
GTAATAACGACCCACAGTGTCTATAGTCTGACGCCAATCTATGCCCTTAC
CTGTTTTGATTTCTTCGTGTGTTTGGGTTTTGACCCTTTTGTTCTAGCAC
CGTATTTTTCCCCCGTCTGTTTCTTTTTTTTTTTCTTCTCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_p11.g1 MSMg01no405_p11.g1 CHROMAT_FILE:
MSMg01no405_p11.g1 PHD_FILE: MSMg01no405_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:07 2005
         (353 letters)



>mm_chr7_148706085_148706837
          Length = 753

 Score =  646 bits (334), Expect = 0.0
 Identities = 349/354 (98%), Gaps = 2/354 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgtgtagtgaggctccgttctata-tgttttcttcctcagctgaccaaacagtcttgc 59
           |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 553 tgtgtgtagtgaggctccgttctatact-ttttcttcctcagctgaccaaacagtcttgc 495

                                                                       
Query: 60  agacctaggtggaagagacagcaagggggtcacagacttccagaagggcctccagaattg 119
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 494 agacctaggtggaagagacagcaagggggtcacatacttccagaagggcctccagaattg 435

                                                                       
Query: 120 tggtatcagctgcctctgccgggtgctcatttctggatctcttggtatacagtgttggct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tggtatcagctgcctctgccgggtgctcatttctggatctcttggtatacagtgttggct 375

                                                                       
Query: 180 ggggtgctatagctaggcggaaacttggagtggacagttcagaaacctgtggcaggtttt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ggggtgctatagctaggcggaaacttggagtggacagttcagaaacctgtggcaggtttt 315

                                                                       
Query: 240 ggttctgtagaagctgctctcagattctggtcaggcttggggtgtcatattttgcaaagg 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 314 ggttctgtagaagctgctctcagattctggtcaggcttggggtgtcatattttgcagagg 255

                                                                 
Query: 300 acctctctgtccaagcatctcctcccaaactcccagtcctttgcctgaagtgga 353
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 254 acctctctgtccaagcatctcctcccaaactcccagccctttgcctgaagtgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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