BAC Information

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BAC

Clone NameMSMg01-406B09
Chromosome7 (Build37)
Map Location 109,113,002 - 109,113,547
singlet/doubletsinglet
Overlap geneLOC667222
Upstream geneP2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51
Downstream geneNuma1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406B09.T7 (MSMg01no406_b09.b1)MSMg01-406B09.TJ (MSMg01no406_b09.g1)
ACCAG504364AG504365
length760754
length of high quality
(start - end)
110 (69 - 178)546 (76 - 621)
definitionCHROMAT_FILE: MSMg01no406_b09.b1 PHD_FILE: MSMg01no406_b09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:16 2005CHROMAT_FILE: MSMg01no406_b09.g1 PHD_FILE: MSMg01no406_b09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATAATTTGCNNCCGCTAAACGACTCCTATTTTCCAGAGAATCCGCGNAA
TTCAATGACTTTCCTGATGTTTCTGAANACGGGGACAATGTACTCATATA
CATAAAATAAATAAACCTTTAAAAAAAGAAAAGAATGGCCTTAAAGGTAC
AGAGACCATCCCACCTCTACCCTCTAGAAGCTTAAATTCTATGGGGTAGC
AACCAATCTGGTTTTGACAAGTTGAACACGAAAACCAATCTCCTTAACCA
TTTTTTTTTTTGTTTCAGCAGTCTTAGCCGGCGGACCNTGAGGGTTTTTT
GGGGGGGGCCCCTNNNNNNNNNNNNAAATTTTCCCGAGGNNNNNGGGGCC
NCCTNNNNNNNNNCCCCCCCCCCTTTNNNNNNNNNNNNNTTGCGCNNNNN
NNNNNNNNNNNNNNNNNNNAAGGGGGGGGGAGAAAACCCCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANTTG
CGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTNNNGGGGGGGGTGGGGGGGGGANNTNNNNNNNNNNNNNNNNNNNNN
NNNNNAAANNNAGCTGCCCCCCCCCCCCCCCCCCCCNCCCCGGCGNGGGG
GGNNNNNNNNNNNNGGNNNTGGGGNNNNNNNNCCCCNCCATGCCCCCCGT
CCCCCCCNNC
CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGACCAACCAGAGATACATAGTGG
AGACTGTCTCAAAAACAAACAAAACAAACAAACAAACAAACAAACAGCAA
AACTTATCAGAAGCAACAAGCATTGAAGAAAAGTGTTCCTCGAGGGAAAT
GCTGGTGATAGCTCAGGGTAAGAAAAGGAAGCCGAAAGGAAAGGCAGGCA
GTCACTGCAACTTGTTGGAGAGATGTACTGTTTCCAAGGCCTGACCTCCA
GCCCATTTACCATCACCCTCTTCTCCCTCTCCAGGGCAGTGGCTGGTTAA
TGAGTCACTGTTGCAAAGCCTGAAGTTTCCCGGGAGAAAAGCAGAGGGCA
AAAACAACTCCCAGAGAGGACTGATTAGTCAAGTCCAAGAGTCCCCACTC
AGTTCTCCCTCAAGATGGCCTTTCTACAAAACTAAGAACCTGCTGGGCAA
GGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGAT
TTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACGCCAG
GGCTACACAGAGAAACCCTGTCTTGGAAAAATATATATTATTATTATTTT
TAATCTTTCCAAACTAAACATAAACCTACTTATAACCTTGTTTGCCCTGT
CTCAGTGCCACAGAGAATAAAAAGGCCGAAGGTCCTCATAGTAAAACATC
CGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_b09.g1 MSMg01no406_b09.g1 CHROMAT_FILE:
MSMg01no406_b09.g1 PHD_FILE: MSMg01no406_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:16 2005
         (546 letters)



>mm_chr7_109112861_109113807
          Length = 947

 Score =  996 bits (515), Expect = 0.0
 Identities = 539/547 (98%), Gaps = 2/547 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaccaaccagagatacatagtggagactgtctcaaaaacaaacaaaacaaacaaacaa 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 687 cagaccaaccagagatacatagt-gagactgtctcaaaaacaaacaaaacaaacaaacaa 629

                                                                       
Query: 61  acaaacaaacagcaaaacttatcagaagcaacaagcattgaagaaaagtgttcctcgagg 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 acaaacaaatagcaaaacttatcagaagcaacaagcattgaagaaaagtgttcctcgagg 569

                                                                       
Query: 121 gaaatgctggtgatagctcagggtaagaaaaggaagccgaaaggaaaggcaggcagtcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gaaatgctggtgatagctcagggtaagaaaaggaagccgaaaggaaaggcaggcagtcac 509

                                                                       
Query: 181 tgcaacttgttggagagatgtactgtttccaaggcctgacctccagcccatttaccatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgcaacttgttggagagatgtactgtttccaaggcctgacctccagcccatttaccatca 449

                                                                       
Query: 241 ccctcttctccctctccagggcagtggctggttaatgagtcactgttgcaaagcctgaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ccctcttctccctctccagggcagtggctggttaatgagtcactgttgcaaagcctgaag 389

                                                                       
Query: 301 tttcccg-ggagaaaagcagagggcaaaaacaactcccagagaggactgattagtcaagt 359
            |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cttccccaggagaaaagcagagggcaaaaacaactcccagagaggactgattagtcaagt 329

                                                                       
Query: 360 ccaagagtccccactcagttctccctcaagatggcctttctacaaaactaagaacctgct 419
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ccaagagtccccacttagttctccctcaagatggcctttctacaaaactaagaacctgct 269

                                                                       
Query: 420 gggcaaggtggcgcacgcctttaatcccagcacttgggaggcagaggcaggtggatttct 479
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 268 gggcaaggtggcgcacgcctttaatcccagcactcaggaggcagaggcaggtggatttct 209

                                                                       
Query: 480 gagtttgaggccagcctggtctacagagtgagttccaggacgccagggctacacagagaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gagtttgaggccagcctggtctacagagtgagttccaggacgccagggctacacagagaa 149

                  
Query: 540 accctgt 546
           |||||||
Sbjct: 148 accctgt 142


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 947
Length adjustment: 10
Effective length of query: 536
Effective length of database: 937
Effective search space:   502232
Effective search space used:   502232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)