BAC Information

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BAC

Clone NameMSMg01-406O18
Chromosome7 (Build37)
Map Location 13,613,954 - 13,614,189
singlet/doubletsinglet
Overlap geneTrim28
Upstream geneLOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553
Downstream geneChmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406O18.T7 (MSMg01no406_o18.b1)MSMg01-406O18.TJ (MSMg01no406_o18.g1)
ACCAG505003AG505004
length757852
length of high quality
(start - end)
236 (79 - 314)265 (75 - 339)
definitionCHROMAT_FILE: MSMg01no406_o18.b1 PHD_FILE: MSMg01no406_o18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:24 2005CHROMAT_FILE: MSMg01no406_o18.g1 PHD_FILE: MSMg01no406_o18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTCTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCTAGAGAATC
CGCGGAATTCCCATTGTGTCCAATAATAAATACTGCCTCACCTCAAATGC
TCCCATGGTCCAAGCAAAAAAAAAGGGCTAAGCAACCTACCAAAGGCTTC
AGCACTCTTGGTCCAGGCATTGAGATCCCACTGAAACTTCATCTCACCAT
GAGGCTCCACAGGATCCACAATCATTTTGAGGGCCCGATGCAGCTGGAAA
TAGATCTAATGGGGGAGAGGGTGCAAAAATATGGCATATGAGCATACTTG
GCAACTTATAAGGTCTTAAGTTTTTTATGGGCCACCTAGCTGAATGAAGC
CCACCACTACACACCAGCTTCTTAGAGAGCAAGAGAGCTGTATTGTTATC
ACTCTCCAGAGCCCAAGAGGCAAAACGCAAAATGTGTTCCTGGTGCTTCT
GAATTTTGGTCATGGTCCAGTGCTGGCGCTCCAGACGTTCCTGCTGAACC
TCGGTCACCTTCTGCAATTCAAGGAAAATCAGTCTCGTTAGGGAAAGCAG
ATAGTACTAGGATCCTTCTCCACCCCGCATTGTCTTTGTCTCTTGTCAGC
TCAAATGTATGTTGTCCGGCTCGGTTTCTCATACTCTCTTGTCATGCGCA
TTTTTTTATTTTCTAGGCCCCTCCTATTTCATCATCTTATTCTATGCCCA
TTAATACCTGCCTTTATATCCCTCCCCAATTCACCTATTCCCCCCCCCTC
CTTCCTN
CCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCAGGCAATGGATGAAACTGGAATC
ATCTTGAGTAATGTAACCCAGACCCAAAAGGACATGCATGGTGTGTACTC
ACTTATAAGTGGGTATTAGCCATAAAGTACAAGATAACCACTCTACAATC
CACAGACCCAAAGAAGCCAAATAGCAAGAAGGACCCAAAAAGAAGCTGAT
TAAGTCTTTCTCAGAAGGGGGAAATAAAATAGATATCAGAGGTGGATGGA
TGGAGGGAACTGGGTGATATTTGGGATGGGGAGGAGANTTNTTNTTTTTN
NTTNNNNTTTTTTTTTTTTTTTTCCTTTTTTCTTTTTTTTTCTCTTCCTT
CTTTTTCTTTTTTTTTTTTTTTTCTCTTTATTTTTCTTTTACTTTTCTTT
TTTTTCCAATTTTTACTTCTTTATATTATTTTTATCTATTTATTGCCTTA
CATATTCTTTTCTTTACATTTACTCTTCCATTTCATATTATTATTTCTCT
TATCTTCTATTCTTATTTTATCATTACTTATATCTATTTTTATTTTTTAT
CATCTTCCCTTCTCCTTTTACTTATTATCATCTTTCCTTTTTACTTTTTC
TCTTATATTTTTTTTAGCTGTCCCTTCTGTTTTTTTTTTCTCCACTTTCA
CTTACCCAATCGTCTTCCTTCTCTTTTTTTTTTTTTCTTTTTCCTTTTTC
ACTTTTCTCCCCCCCCTTATCTCACATTACTTTTTATCTTTTTTATTTTC
TCTCCCCCTCTTTCCCTTTTTCACTCTTTTCTTACCTTCTTCCCCTACCC
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_o18.b1 MSMg01no406_o18.b1 CHROMAT_FILE:
MSMg01no406_o18.b1 PHD_FILE: MSMg01no406_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:24 2005
         (236 letters)



>mm_chr7_13613754_13614389
          Length = 636

 Score =  456 bits (236), Expect = e-133
 Identities = 236/236 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatactgcctcacctcaaatgctcccatggtccaagcaaaaaaaaagggctaagcaacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aatactgcctcacctcaaatgctcccatggtccaagcaaaaaaaaagggctaagcaacct 377

                                                                       
Query: 61  accaaaggcttcagcactcttggtccaggcattgagatcccactgaaacttcatctcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 accaaaggcttcagcactcttggtccaggcattgagatcccactgaaacttcatctcacc 317

                                                                       
Query: 121 atgaggctccacaggatccacaatcattttgagggcccgatgcagctggaaatagatcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 atgaggctccacaggatccacaatcattttgagggcccgatgcagctggaaatagatcta 257

                                                                   
Query: 181 atgggggagagggtgcaaaaatatggcatatgagcatacttggcaacttataaggt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 atgggggagagggtgcaaaaatatggcatatgagcatacttggcaacttataaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)