BAC Information

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BAC

Clone NameMSMg01-407D04
Chromosome7 (Build37)
Map Location 96,431,168 - 96,605,703
singlet/doubletdoublet
Overlap geneTmem135, LOC100039969, Fzd4
Upstream geneCtsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562
Downstream genePrss23, LOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407D04.T7 (MSMg01no407_d04.b1)MSMg01-407D04.TJ (MSMg01no407_d04.g1)
ACCAG505214AG505215
length761762
length of high quality
(start - end)		595 (42 - 636)541 (72 - 612)
definitionCHROMAT_FILE: MSMg01no407_d04.b1 PHD_FILE: MSMg01no407_d04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:46 2005CHROMAT_FILE: MSMg01no407_d04.g1 PHD_FILE: MSMg01no407_d04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,431,168 - 96,431,758)(96,605,163 - 96,605,703)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTATCTCCGAAATTAGGGCCCTATACTTATCATGGTAAAATGGAGACA
CACCTCGAATGGGTTAAGAAGTAAGATGTGCTCAGTTTAAAGGGGTGCAT
GCCATCTGCTCTGAGAGTAAATGATAGATAAAGGCTTAGAGACACCAGGG
CAAGCCCAGTTCTCACACCTCAGGATCATACTGACAGGACGCGGTCCAGC
ACCCCCAGAGGCTTGGCTCTGGCCACCTCCTGTAGACAGCACCAGTTCCC
GGGTGCCAAGGACAAGGAAGGGTAGTTCAGAGGCTTCCTATTAGTACTGA
CAGAAGAATTTTAAATTTTCCCTTTTTAAAATACTTAAAATTAAAATCGT
CAAAGTCCTTCCTGTACTGTGCTTTGGACATTGATCTGAGGGAGAAAACG
GTGTCAGCACTAGAAGGGCCACCTCACTTTGTTCCATCATTTCCTCCTGG
CCTGTCTCTGGAGTGCTGAACTGACAGGACTGGGAGCTGCAGTGGCCCTG
GGGCCACAATGAGCAGCTGCAAAGAAGTTCCCACTGTACATCTGTCTGGA
AAGATCCAGCTCAAGAAAACCTGCAGGACCCTCAGGAGTGGTCCTCTGCC
GAACACCAAAAGCTAGTACCCAAGAGCCTAGTGAGATGGGATGTGTGAAC
TCTGTACNATTTCCTGACCCTCTGTACATCTTCATCTCCTCCACTACCTG
ATTCTTCCCCT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGAACTTCAGGGTTAGTGAGAGACCTTG
TCTCAAAAGAGTGAAAATGGAGAAGGATAAAAGAACACATTGAACTCAGG
CATATGTGTGAGCATGCATGTGCGTGCACATCTACGCACATATATACAAA
CCACACACACTTTTAATATGTCACAAATATTCTAATTAAGACTACAAATT
TAGTTTGCACACACACAAAAACCACCACCCTCTTTTCCAAACGTAATTGC
AAAGCAGCTACTTCAGGAAGTGTATAAGGAATGGTATTTTGTTGATTTTA
TTGAACTTTAAGGTATGGTGCCATTTACTGCCTGCTCTTCCTGTTTGGGG
GAGGGGGTGAGAAAATGAGAAATGCAGAGTGGAATGGCTTGTTCAGCTTT
CCCATTCTTTAATAAGGCATTGACCCATGTCAAAGAAACATAATATACAC
GCACATGCAAACAAGGACTCCCATTTACCTCATTTTTAAATTTAAATTAT
AGCATCCGGCCATTCATCTTTGTCACAGCCCACCAAACAGTTTTGTAAAA
ACGTGTTTCACAAACAAGCACTTCTTTTAGAAGAGCCGCGAATGTTAATG
GTGAGATTCTGTCTGACACAACCCTTTTCGGAATTCCCCCCTCAACACCA
GTTCACGCGCTTACATGAAACTCTGGCATCCATTTTTGGGATCCACCCTC
AAAAACCTATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_d04.b1 MSMg01no407_d04.b1 CHROMAT_FILE:
MSMg01no407_d04.b1 PHD_FILE: MSMg01no407_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:46 2005
         (595 letters)



>mm_chr7_96430964_96431958
          Length = 995

 Score = 1135 bits (587), Expect = 0.0
 Identities = 590/591 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctatctccgaaattagggccctatacttatcatggtaaaatggagacacacct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctatctccgaaattagggccctatacttatcatggtaaaatggagacacacct 264

                                                                       
Query: 65  cgaatgggttaagaagtaagatgtgctcagtttaaaggggtgcatgccatctgctctgag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgaatgggttaagaagtaagatgtgctcagtttaaaggggtgcatgccatctgctctgag 324

                                                                       
Query: 125 agtaaatgatagataaaggcttagagacaccagggcaagcccagttctcacacctcagga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtaaatgatagataaaggcttagagacaccagggcaagcccagttctcacacctcagga 384

                                                                       
Query: 185 tcatactgacaggacgcggtccagcacccccagaggcttggctctggccacctcctgtag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcatactgacaggacgcggtccagcacccccagaggcttggctctggccacctcctgtag 444

                                                                       
Query: 245 acagcaccagttcccgggtgccaaggacaaggaagggtagttcagaggcttcctattagt 304
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 acagcaccagttcccgggtgccaagggcaaggaagggtagttcagaggcttcctattagt 504

                                                                       
Query: 305 actgacagaagaattttaaattttccctttttaaaatacttaaaattaaaatcgtcaaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actgacagaagaattttaaattttccctttttaaaatacttaaaattaaaatcgtcaaag 564

                                                                       
Query: 365 tccttcctgtactgtgctttggacattgatctgagggagaaaacggtgtcagcactagaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tccttcctgtactgtgctttggacattgatctgagggagaaaacggtgtcagcactagaa 624

                                                                       
Query: 425 gggccacctcactttgttccatcatttcctcctggcctgtctctggagtgctgaactgac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gggccacctcactttgttccatcatttcctcctggcctgtctctggagtgctgaactgac 684

                                                                       
Query: 485 aggactgggagctgcagtggccctggggccacaatgagcagctgcaaagaagttcccact 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aggactgggagctgcagtggccctggggccacaatgagcagctgcaaagaagttcccact 744

                                                              
Query: 545 gtacatctgtctggaaagatccagctcaagaaaacctgcaggaccctcagg 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtacatctgtctggaaagatccagctcaagaaaacctgcaggaccctcagg 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no407_d04.g1 MSMg01no407_d04.g1 CHROMAT_FILE:
MSMg01no407_d04.g1 PHD_FILE: MSMg01no407_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:46 2005
         (541 letters)



>mm_chr7_96604895_96605835
          Length = 941

 Score = 1038 bits (537), Expect = 0.0
 Identities = 540/541 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaacttcagggttagtgagagaccttgtctcaaaagagtgaaaatggagaaggataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 aagaacttcagggttagtgagagaccttgtctcaaaagagtgaaaatggagaaggataaa 750

                                                                       
Query: 61  agaacacattgaactcaggcatatgtgtgagcatgcatgtgcgtgcacatctacgcacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 agaacacattgaactcaggcatatgtgtgagcatgcatgtgcgtgcacatctacgcacat 690

                                                                       
Query: 121 atatacaaaccacacacacttttaatatgtcacaaatattctaattaagactacaaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 atatacaaaccacacacacttttaatatgtcacaaatattctaattaagactacaaattt 630

                                                                       
Query: 181 agtttgcacacacacaaaaaccaccaccctcttttccaaacgtaattgcaaagcagctac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agtttgcacacacacaaaaaccaccaccctcttttccaaacgtaattgcaaagcagctac 570

                                                                       
Query: 241 ttcaggaagtgtataaggaatggtattttgttgattttattgaactttaaggtatggtgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttcaggaagtgtataaggaatggtattttgttgattttattgaactttaaggtatggtgc 510

                                                                       
Query: 301 catttactgcctgctcttcctgtttgggggagggggtgagaaaatgagaaatgcagagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 catttactgcctgctcttcctgtttgggggagggggtgagaaaatgagaaatgcagagtg 450

                                                                       
Query: 361 gaatggcttgttcagctttcccattctttaataaggcattgacccatgtcaaagaaacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gaatggcttgttcagctttcccattctttaataaggcattgacccatgtcaaagaaacat 390

                                                                       
Query: 421 aatatacacgcacatgcaaacaaggactcccatttacctcatttttaaatttaaattata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aatatacacgcacatgcaaacaaggactcccatttacctcatttttaaatttaaattata 330

                                                                       
Query: 481 gcatccggccattcatctttgtcacagcccaccaaacagttttgtaaaaacgtgtttcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 329 gcatccggccattcatctttgtcacagcccaccaaacagttttgtaagaacgtgtttcac 270

            
Query: 541 a 541
           |
Sbjct: 269 a 269


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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