Query= MSMg01no407_j04.b1 MSMg01no407_j04.b1 CHROMAT_FILE:
MSMg01no407_j04.b1 PHD_FILE: MSMg01no407_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:15 2005
(499 letters)
>mm_chr7_52554721_52555619
Length = 899
Score = 934 bits (483), Expect = 0.0
Identities = 492/495 (99%)
Strand = Plus / Plus
Query: 5 gaattcattccataccccagaataatctccctcagcccctgagggctgcgacacctcagt 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattccatagcccagaataatctccctcagcccctgagggctgcgacacctcagt 264
Query: 65 agactgaaccgacttctctgtcagggtgttcagtgggtaaaggcacatcagccccaagaa 124
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 agactgaaccgacttctctgtcagggtgttcagtgagtaaaggcacatcagccccaagaa 324
Query: 125 acaacaggcagcaggacctggaattttcaaacggtttatatagctctccccctgctttgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaacaggcagcaggacctggaattttcaaacggtttatatagctctccccctgctttgg 384
Query: 185 tctgttactatgcaaaacacaaccaagaagatatgaagtttcctgggggtggccacacgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctgttactatgcaaaacacaaccaagaagatatgaagtttcctgggggtggccacacgc 444
Query: 245 attaacaaatggcataagctgcgtgagcccagaattgaggcaagtggagttccagttctt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attaacaaatggcataagctgcgtgagcccagaattgaggcaagtggagttccagttctt 504
Query: 305 ctcagctgagttttggccagtctattcctgttgctggtggtggtcacatagtgtagagaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctcagctgagttttggccagtctattcctgttgctggtggtggtcacatagtgtagagaa 564
Query: 365 accttcaacagagactggtggatgctgccacctagcgaacacatcagcccttaccacagt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 accttcaacagagactggtggatgctgccacctagcgaacacatcagcccttaccacagt 624
Query: 425 cccaaccagtcattcaaggggtgggatgtctgtgaattgaggaaccagcaatgtgggggg 484
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 625 cccaaccagtcattcaaggggtaggatgtctgtgaattgaggaaccagcaatgtgggggg 684
Query: 485 tgaggaggtggctaa 499
|||||||||||||||
Sbjct: 685 tgaggaggtggctaa 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_j04.g1 MSMg01no407_j04.g1 CHROMAT_FILE:
MSMg01no407_j04.g1 PHD_FILE: MSMg01no407_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:15 2005
(451 letters)
>mm_chr7_52741755_52742605
Length = 851
Score = 833 bits (431), Expect = 0.0
Identities = 447/453 (98%), Gaps = 2/453 (0%)
Strand = Plus / Minus
Query: 1 caaaagtcacacaatcgcagaaactctctgcagctggccaaaccacacctctgctagagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 836 caaaagtcacacaatcgcagaaactctctgcagctggccaaaccacacctctgctagggc 777
Query: 61 acaaggcaaatcatagtcagctgctgtggacagtccatatcctacagctgggactgaaat 120
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 776 acaaggcaaatcatagtcagctgctgtggacagtccatatcccacagctgggactgaaac 717
Query: 121 gaaaacatattcttatgtttctg--ttttttttaaagaaaccaaaatttccaaattgtca 178
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 716 gaaaacatattcttatgtttctgttttttttttaaagaaaccaaaatttccaaattgtca 657
Query: 179 ctacacaaaagcttggtagtctcccctcaatgagaaccctagaactgtattcacagcctt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ctacacaaaagcttggtagtctcccctcaatgagaaccctagaactgtattcacagcctt 597
Query: 239 gcctctgaacgttggcggccaggccctcttgctggccgtgctgctgaccatccctctctc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gcctctgaacgttggcggccaggccctcttgctggccgtgctgctgaccatccctctctc 537
Query: 299 ctccctcctcccctagaggtggcctacatcgccacccagcacccccagcacaagccagct 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ctccctcctcccctagaggtggcctacatcgccacccagcacccccagcacaagccagcc 477
Query: 359 gtactcctctgcctggcagcaggcaaggctgtcctttgtgagaaacccatgggcgtgaat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gtactcctctgcctggcagcaggcaaggctgtcctttgtgagaaacccatgggcgtgaat 417
Query: 419 gcagcagaagttcgggagatggttgccaaagcc 451
|||||||||||||||||||||||||||||||||
Sbjct: 416 gcagcagaagttcgggagatggttgccaaagcc 384
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space: 370881
Effective search space used: 370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
