Query= MSMg01no407_k20.b1 MSMg01no407_k20.b1 CHROMAT_FILE:
MSMg01no407_k20.b1 PHD_FILE: MSMg01no407_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:23 2005
(182 letters)
>mm_chr7_122801724_122802306
Length = 583
Score = 325 bits (168), Expect = 1e-93
Identities = 177/180 (98%), Gaps = 1/180 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttca-tagagcattagaagaagctatgggcttatgctattgatgcttttggaa 62
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 204 ggaattcttcaatagagcattagaagaagctatgggcttatgctattggtgcttttggaa 263
Query: 63 gtattagaaggcaggacatcaacccctggaaaagcactcataattctcagaagacactgg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtattagaaggcaggacatcaacccctggaaaagcactcataattctcagaagacactgg 323
Query: 123 ctcagctgtgatggtctagatctcaatgggttagaaaatatccacaacaaacaagagaaa 182
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 324 ctcagctgtgatggtctagatctcaatgggttagaaaatatctacaacaaacaagagaaa 383
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 583
Length adjustment: 8
Effective length of query: 174
Effective length of database: 575
Effective search space: 100050
Effective search space used: 100050
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no407_k20.g1 MSMg01no407_k20.g1 CHROMAT_FILE:
MSMg01no407_k20.g1 PHD_FILE: MSMg01no407_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:23 2005
(518 letters)
>mm_chr7_122973063_122973980
Length = 918
Score = 930 bits (481), Expect = 0.0
Identities = 503/511 (98%), Gaps = 2/511 (0%)
Strand = Plus / Minus
Query: 1 ctagggattttgtctgaagtgagaccagtttgctcttcacttttgcaaccaccgcctcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctagggattttgtctgaagtgagaccagtttgctcttcacttttgcaaccaccgcctcag 506
Query: 61 gcagaagcagaagccagttggtgctcagcgctgccccaggatttccttggtgtcttcccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcagaagcagaagccagttggtgctcagcgctgccccaggatttccttggtgtcttcccc 446
Query: 121 aggccacggctctgagcccctcacagctgttgtgttgtgttctgaggagggggccttatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggccacggctctgagcccctcacagctgttgtgttgtgttctgaggagggggccttatg 386
Query: 181 ctggtttagggttacagagtctggtattgagtttcagttcttagtgaacaatggctgctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctggtttagggttacagagtctggtattgagtttcagttcttagtgaacaatggctgctc 326
Query: 241 gttctgaggtatgccatatgatttgctgtattcctgagaggatgacatgggtgctttata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttctgaggtatgccatatgatttgctgtattcctgagaggatgacatgggtgctttata 266
Query: 301 attcacttgagcaaaaatggcatacttggcatactcttgtccttcttaaagaggaatata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 attcacttgagcaaaaatggcatacttggcatactcttgtccttcttaaagaggaatgta 206
Query: 361 tctcattttctctttctttctttctttctttctttctttctttctttctttctttctttc 420
||||||||||||| ||| ||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 205 tctcattttctctctctctctctct--ctttctttctttctttctttctttctttctttc 148
Query: 421 tttctttctttctttctttctatctttccttcctttctttctttctttctttctttcttt 480
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 147 tttctttctttctttctgtctatctttcctttctttctttctttctttctttctttcttt 88
Query: 481 ctttctttctttctttctttctttctttctt 511
|||||||||||||||||||||||||||||||
Sbjct: 87 ctttctttctttctttctttctttctttctt 57
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 175
Number of extensions: 67
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
