BAC Information

Click to search

BAC

Clone NameMSMg01-407O20
Chromosome7 (Build37)
Map Location 123,480,251 - 123,480,614
singlet/doubletsinglet
Overlap genenone
Upstream geneSox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13
Downstream genePik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407O20.T7 (MSMg01no407_o20.b1)MSMg01-407O20.TJ (MSMg01no407_o20.g1)
ACCAG505766AG505767
length756772
length of high quality
(start - end)		477 (45 - 521)462 (75 - 536)
definitionCHROMAT_FILE: MSMg01no407_o20.b1 PHD_FILE: MSMg01no407_o20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:43 2005CHROMAT_FILE: MSMg01no407_o20.g1 PHD_FILE: MSMg01no407_o20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAAAGAACAGAGTAATTATTGCTACCACATTACATAAGGATATGT
GGGTGAGGTGATGAATATTAATGTTTCAACAGCTTCACAATGTATGCATA
TACCAAAATCTCCCATCTGTTCCATCAATATATAACTATTACTTTTTCAA
ATGTATGATTATGTTTGTGTGTGTATGCACATGTGTTGGAGTGGGCACAC
CCATGTATGTTTGTGTCTGGAGGCCAGAAGAGGACATCAAGGGTCCTGCT
CTAACATTCTCTGCCCCCTTCCCTTGAGACAGTGTCTCTCCCTAGCCTAG
AACTTCTTGTCTGACTAAGGCAGCTGGCCAGTGAGCTCCCAGATCCATCT
GTCTGCCCCCTAACACTGGGATTGCCTGACATGGGTGGAACTGCACAAGA
ATCACTCGTGCCAAGTGTCATCTCTCTACTCCCATAGTTACTACTTTTGG
TTAAAAGTAAAAGCTGGAGAGATGCCTTAGCACTGGCTGCTCTTACAAGG
ACCTGGGTTCAATTCTCAGCACTGACATGGTGGCTCACAACCATCTGTAA
CTTCAGTTCCAGGGGCTCTAACTCTCTTATCTGAACTCTGCAAACTGCAG
GAACCACCCCCCTGGTCCCCTTTAATTAATTAAATTAAATAATATAAATT
CAATATTTTAAAAACTTTAAAAACCAGAGAAAAATAACTCTCTTTTATAA
TCTCTA

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTAGGCATGGTTCTTGGTCTGTGAA
AGTTCACTTAGCCACATTCGGAAGTGCAAATTAACACCATACCTTTATTC
TGGATTATGAGCACAAGACTGGCTCTCTAACCATTCTAATAATTTGGAAA
AAAAAAAAACCAGTATAAAGACCTTGAAAGGACAATTAAGGGGCTGTTGA
GATGGCTAAGCGGCTAAGGGCACTAGCTACTCTTCCAGAGGTCTTGAATT
CAATTCCCAGCAACCACATGGTGGCTCACAACCATCTACTAGAGGATCTG
ATGACTTCTTTCAGTGGGCAGATATATATGCAGCAGAGCATTCATACATT
AAATAAAAAGCCTCTGGCTCCCAAAATCTTCAGAGAGAGAGATGGCTTAT
GTAAGCTTATCCTTTGAAATAACTGAGTTTTGCCTGAGTGCCAAGCTGTT
TGCCGGTACTAGAGTTCAAACTATTGCAGGTAGTGGGCTAGAGAGATGGC
TTAGTGCTACAATGGCTTTCTGTTGTAGAAAACTAAAGTTTGGTTCCCAG
TACAAAGTACAAGTGCTTATTACTCTAAGTCTTACCCAATATCGTCTTCG
GGCCTCTGGGGACTGGACTCCACCTGGCCAGCTGGTTAAACAAAAATTTA
AAAAGGGGGGGGGCGGTTAAAAAAAAAAATAAAGGTTTAAACAACTATTG
TTTCTTTCAAGAAATGGTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_o20.g1 MSMg01no407_o20.g1 CHROMAT_FILE:
MSMg01no407_o20.g1 PHD_FILE: MSMg01no407_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:44 2005
         (462 letters)



>mm_chr7_123480251_123481111
          Length = 861

 Score =  683 bits (353), Expect = 0.0
 Identities = 362/365 (99%), Gaps = 1/365 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaggcatggttcttggtctgtgaaagttcacttagccacattcggaagtgcaaattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tgtaggcatggttcttggtctgtgaaagttcacttagccacattcggaagtgcaaattaa 305

                                                                       
Query: 61  caccatacctttattctggattatgagcacaagactggctctctaaccattctaataatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 caccatacctttattctggattatgagcacaagactggctctctaaccattctaataatt 245

                                                                       
Query: 121 tggaaaaaaaaaaaaccagtataaagaccttgaaaggacaattaaggggctgttgagatg 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tgg-aaaaaaaaaaaccagtataaagaccttgaaaggacaattaaggggctgttgagatg 186

                                                                       
Query: 181 gctaagcggctaagggcactagctactcttccagaggtcttgaattcaattcccagcaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gctaagcggctaagggcactagctactcttccagaggtcttgaattcaattcccagcaac 126

                                                                       
Query: 241 cacatggtggctcacaaccatctactagaggatctgatgacttctttcagtgggcagata 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 125 cacatggtggctcacaaccatctactagaggatctgatgacttcttccagtgggcagatt 66

                                                                       
Query: 301 tatatgcagcagagcattcatacattaaataaaaagcctctggctcccaaaatcttcaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  tatatgcagcagagcattcatacattaaataaaaagcctctggctcccaaaatcttcaga 6

                
Query: 361 gagag 365
           |||||
Sbjct: 5   gagag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 861
Length adjustment: 10
Effective length of query: 452
Effective length of database: 851
Effective search space:   384652
Effective search space used:   384652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |