BAC Information

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BAC

Clone NameMSMg01-407O23
Chromosome7 (Build37)
Map Location 4,738,589 - 4,738,958
singlet/doubletsinglet
Overlap gene2210411K11Rik
Upstream geneLOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik
Downstream geneRpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407O23.T7 (MSMg01no407_o23.b1)MSMg01-407O23.TJ (MSMg01no407_o23.g1)
ACCAG505772AG505773
length753758
length of high quality
(start - end)
563 (44 - 606)430 (73 - 502)
definitionCHROMAT_FILE: MSMg01no407_o23.b1 PHD_FILE: MSMg01no407_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:44 2005CHROMAT_FILE: MSMg01no407_o23.g1 PHD_FILE: MSMg01no407_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATAGGGTTACCAGAAGAGAGGCATAAATGGACAGTTAGATGGATAGT
TTGGGCAGGTAGATATGCAAATAAATGGATGGGTTTGATTTTGGATGGAT
GGGAACGACTGAATCCACTTCCTAGGTGGGATTTCTGTAAAAGGATTAAA
CTCTAAAACTGTGGTGTGTGTGTGTGTGTGTGTGCGCGTGTGTGTACATT
TGTATAGAGGTCAGAGGATTAATTTTTGTGTCATTCCTCAGGAACTAGCA
ATCTTGCTTTTTGAGACAGGATCTCTGGTTGGCCTGGAGCTCACTGATTA
AGCTAGACTGCCTTGCCAATCAGCCCCAGGCATTTAAGAGTCTCTGCCTC
CACACCACTGGGCTTACAAGCACCATGGAGCCTGGCACTCTTTATATAGC
GCACACTAGCGAAGGCACCATGGTGCATCTGTGAGGGTCAGAGAACATCT
TTCATAAACAGATTCTCTCCTTCCACCATTGAATTTAGGGTGTTGGGATT
ACATGGCAAGTGTGTTTACCCAATGAGATATCTCACCAGCCCAAGACATT
TTTACTTTTCTCCTGGGATCCAAAGAAATTCTGTGCCTCATGAGAACTAA
AAATTTGATTCTATGTTCTGCGGTTCAAATGAGGAAACCAGTAGGGCTAG
GGGCGTGGTTCACTTTGTAAGATAACTTACTTATTTTGTTCGTGTCAGGC
CCT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTGATATGGCTTTCCTTGAATTCACTT
TGTAGACCAGGTTGGCCTCAAACTATCAGAGGTGTAGTAATAATTTTGGA
ATCTTGGTTTCTTTGAAAAAAAAAAAAACAGAAATGTGGCTAGTGAGATG
GGTCAGTGGTTAAGAGACTGCTCTTCCAGAGGTCCTGAGTTCAATCTCCA
GCAACCACATGGTGGCTCACAACCATCGTTAAAGGGATCTGATGCCCTCT
TCTGTCATGCAGATGCCCATGCAGACAAATCACTCATACATTAAACAAAA
TACATAAATAAAAACAGAAATATTATAAGAATATGTTTCCATTTTAAGCC
CATATGTGGGGATATGGTGTTGCTTCAGACTGACCGCAGCAGCTGACTAT
GATCTGCCTCGTGCTTTAGCAGAGGCATGGTTTTGCCAGCTGCACGTAGT
TTGTGGTCTGTGATTGTGTGATGTTTGGAATTCGGGGAACTTTTCAGAGG
GCCCTGAGAAGTANTGGTGGGAGGGGTTTGTTTTTTTNNNNNTNNTTTTT
NTTTTNTTNNTTTTTTTTTNNTTTTNTTTTTTTTTTTTTTTTTTTTTTNN
NTTTNTTTTNTTTTTTTTTTTTTTTTNNTTTNNTTTNNTTTTTTTTTTNT
TNNTNTCTTTTTTTTTNTTNNTTTTTTTNTTTTTTTTTTTNTTTTTTTTT
TNTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_o23.b1 MSMg01no407_o23.b1 CHROMAT_FILE:
MSMg01no407_o23.b1 PHD_FILE: MSMg01no407_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:44 2005
         (563 letters)



>mm_chr7_4738589_4739551
          Length = 963

 Score =  673 bits (348), Expect = 0.0
 Identities = 366/374 (97%), Gaps = 4/374 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatagggttaccagaagagaggcataaatggacagttagatggatagtttgggca 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gaattcatagggttagaagaagagaggcataaatggacagttagatggatagtttgggca 311

                                                                       
Query: 65  ggtagatatgcaaataaatggatgggtttgattttggatggatgggaacgactgaatcca 124
           ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 310 ggtagatatgcaaataaatggatggctttgattttggatggatgggaatgactgaatcca 251

                                                                       
Query: 125 cttcctaggtgggatttctgtaaaaggattaaactctaaaactgtggtgtgtgtgtgtgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cttcctaggtgggatttctgtaaaaggattaaactctaaaactgtggtgtgtgtgtgtgt 191

                                                                       
Query: 185 gtgtgtgcgcgtgtgtgtacatttgtatagaggtcagaggattaatttttgtgtcattcc 244
           ||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gtgt----gcgtgtgtgtacatttgtatagaggtcagaggattaatttttgtgtcattcc 135

                                                                       
Query: 245 tcaggaactagcaatcttgctttttgagacaggatctctggttggcctggagctcactga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tcaggaactagcaatcttgctttttgagacaggatctctggttggcctggagctcactga 75

                                                                       
Query: 305 ttaagctagactgccttgccaatcagccccaggcatttaagagtctctgcctccacacca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  ttaagctagactgccttgccaatcagccccaggcatttaagagtctctgcctccacacca 15

                         
Query: 365 ctgggcttacaagc 378
           ||||||||||||||
Sbjct: 14  ctgggcttacaagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)