Query= MSMg01no408_e04.b1 MSMg01no408_e04.b1 CHROMAT_FILE:
MSMg01no408_e04.b1 PHD_FILE: MSMg01no408_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:11 2005
(550 letters)
>mm_chr7_102747435_102748383
Length = 949
Score = 1042 bits (539), Expect = 0.0
Identities = 545/547 (99%), Gaps = 1/547 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagctccctcagagaaagcccagaaacatcccctgtttctgagcaaaatgaaat 63
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 749 ggaattcagctccctcagagaaagcccagaaacatcccctgtttctgagtaaaatgaaat 690
Query: 64 ctatatgtttctgtcaatggacttcaatgtgcatttcaaagtttaaactaataaacccca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ctatatgtttctgtcaatggacttcaatgtgcatttcaaagtttaaactaataaacccca 630
Query: 124 acccagcacatataccagctactgccgcaaacttctcatttctcttccagtctgtgaata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 acccagcacatataccagctactgccgcaaacttctcatttctcttccagtctgtgaata 570
Query: 184 attctgaactgtcactatccctctgaaaaagttggccagttagaaaatttatagagataa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 attctgaactgtcactatccctctgaaaaagttggccagttagaaaatttatagagataa 510
Query: 244 aacccagaacttttcagaccagttcactcaattcaaattaacgagccaagcaaacaataa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aacccagaacttttcagaccagttcactcaattcaaattaacgagccaagcaaacaataa 450
Query: 304 gtccataaataaaaaccaacctattacaaaataaatcgtggacttttgtaccatgaggaa 363
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 449 gtccataaataaaaaccaaccta-tacaaaataaatcgtggacttttgtaccatgaggaa 391
Query: 364 agatgctggatattttgtgaaggaaagactggctatgtcactaatagactatatggattc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 agatgctggatattttgtgaaggaaagactggctatgtcactaatagactatatggattc 331
Query: 424 ttctccagagctgagcactgacttacagagagtatatagaactcagatgctggggcggcc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttctccagagctgagcactgacttacagagagtatatagaactcagatgctggggcggcc 271
Query: 484 atggcaaatgggcaagggagattgaagagtgggaagagtggaagatgagatcccaacctc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atggcaaatgggcaagggagattgaagagtgggaagagtggaagatgagatcccaacctc 211
Query: 544 tgctgtg 550
|||||||
Sbjct: 210 tgctgtg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 949
Length adjustment: 10
Effective length of query: 540
Effective length of database: 939
Effective search space: 507060
Effective search space used: 507060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no408_e04.g1 MSMg01no408_e04.g1 CHROMAT_FILE:
MSMg01no408_e04.g1 PHD_FILE: MSMg01no408_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:11 2005
(477 letters)
>mm_chr7_102549375_102550250
Length = 876
Score = 907 bits (469), Expect = 0.0
Identities = 475/477 (99%), Gaps = 1/477 (0%)
Strand = Plus / Plus
Query: 1 tccccatcgtgcagcttctggctcttgctgattgtggagcctgcctgggagatcccgaga 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccccatcgtgcagct-ctggctcttgctgattgtggagcctgcctgggagatcccgaga 259
Query: 61 tgctgattgattggatttcattccactatcgtgcgtgtaatttcatgctaccaagtgaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgctgattgattggatttcattccactatcgtgcgtgtaatttcatgctaccaagtgaca 319
Query: 121 gaaattttctgaaaattctccaatctccccaaattacttagtgttatatatttattcctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gaaattttctgaaaattctccaatctccccaaattacttagtgttatatatttattcctg 379
Query: 181 gcatcgttggactctaaataacccagttttaagatagaatgcttggcacatgaagttctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcatcgttggactctaaataacccagttttaagatagaatgcttggcacatgaagttctg 439
Query: 241 gtcatcaagattcaacaattactttgattggctcttttcagaatgtaagaaactatccca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtcatcaagattcaacaattactttgattggctcttttcagaatgtaagaaactatccca 499
Query: 301 acaggggaaaaaataagaatatgtcagatgaaaaaaggaaaaactgcctcaatgctttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acaggggaaaaaataagaatatgtcagatgaaaaaaggaaaaactgcctcaatgctttct 559
Query: 361 tggagtgtcatgcatctttctgcaagcaaggagacagctggttcttcttagcatggcaga 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tggagtgtcatgtatctttctgcaagcaaggagacagctggttcttcttagcatggcaga 619
Query: 421 aaactctgtttgaggagtaaaataccaacatgtacccaaagataaacaagccaaatg 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaactctgtttgaggagtaaaataccaacatgtacccaaagataaacaagccaaatg 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 876
Length adjustment: 10
Effective length of query: 467
Effective length of database: 866
Effective search space: 404422
Effective search space used: 404422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
