BAC Information

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BAC

Clone NameMSMg01-408J03
Chromosome7 (Build37)
Map Location 120,961,744 - 120,962,199
singlet/doubletsinglet
Overlap geneSpon1
Upstream geneTead1, 4632411J06Rik, LOC434227, Arntl, A630005I04Rik, Btbd10, Pth, LOC100042736, Mlstd2, EG434228
Downstream geneRras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408J03.T7 (MSMg01no408_j03.b1)MSMg01-408J03.TJ (MSMg01no408_j03.g1)
ACCAG506258AG506259
length758768
length of high quality
(start - end)		460 (46 - 505)364 (72 - 435)
definitionCHROMAT_FILE: MSMg01no408_j03.b1 PHD_FILE: MSMg01no408_j03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:35 2005CHROMAT_FILE: MSMg01no408_j03.g1 PHD_FILE: MSMg01no408_j03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCAAACTTATAGTGAACTCCCAGCAAGAAGTTTGGCTCCAAATC
AATGACTTTGCTACCACATCCCCAGCTCTACTAACTCTCTGTGCATGGAG
ACAGGATCTGGAATTCTGCAGAGGCACTAGGGAGGGCAACCCTCATATAC
AGAGGAAAACTGATCCCCATCAGGTCCTTAAAAACTTTGGGTTGTCTGTT
TCTCTTTCCTGTTCCATACTTATGTCTGACATAAACACCGCCAGACAGAT
AGGAAGCTAGATCCGCCTCCTGGAGGTACACTTTCCCACGGACCCAGCCT
CCCAGATTCACCAGATCAGCTAGGCCTCGGGCTTTATCAGAATACAACTT
ATCTTGCCTCTCCCAAGAGGCCCAGAGTGGGGGTTGGCAAATTCCGCTCA
CTGTCAAGTGTGGACAGATGGCTGTCTGGATTAGAAGCACCTTTTGTTTC
TGGTCTCACTCACAAGTCACAAGTGTGAGGCGGAGACTAGATGATGGTGG
TTACCTCCCGACAGGATTCGCAACCCCCCCACTTATTCACCTATCTATCT
ATTCATTAAATCCCTCCAAGTTCCTTATCCATTCTATTGATATTCCATGT
TTCTCCCTTTTGGCCTTTTTCTCCCCTATTTATTCCCCCTTTTCCTCCCT
TTTCTTTTCCTTTTTTTCCCCCCTTTTCCCCCTTTTTCCCCTCTTTATTC
CTCCTCAT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGGGCAACACTGGGTTCTGCAGACTTTG
GATACCTGGGTTTGCAACACTGGCTGCCCCCTGTACCCCCTGACCAAGGA
AAGTGGAGAATTTAGATGGACATCAGAACATCAGAAAGCCTTTGAAAATA
TTATGAAGGCCCTGCTGACTGCACCAGCCTCGGCACTGCCAGATCTAACC
AAGCCCTTCATCCTCTATGTTGATGAGAGGGCAGGGGTGGCCAGAGGAGT
TCTTACTTAGGCTCTAGGGCCGTGAGAGAGGCCGGTGGCATATTTGTCTA
AGAAGCTGGACCCAGTGGCCAGGGGATGGCCCACACGTTTAAAGGTCGTT
GCTACAGTAGCCCTACTCGTTAAGGATGCTGACAAATTAACTCTGGGACA
GCAAATAACTGTGGTAGCCCCCCACTCTCTTGAAAGCATTATCTGTCATC
CCCCAGACCGATGGATGACAAATGCCTGGATGACTCCCTATTATACGCTG
TTGCTGACTGATTGCGCCGTGCCCGTTCTTTCCTGCTTTTCCCCTTTCTG
TCTGGCAAGGCATTTATTCTGATTTGCTCTTGTCTTATTTGCCCCTTTTC
CTCCCCCCCCCCACCTCCCCCCTTCTTCTTTTTTTTTCCCTTTTTTTTCT
ACCCTTTTCCTCTTTATTTTCCCTTTTTCTTTCCTTCACATTTCGCATCC
TATCTTCCTTCTCCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_j03.b1 MSMg01no408_j03.b1 CHROMAT_FILE:
MSMg01no408_j03.b1 PHD_FILE: MSMg01no408_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:35 2005
         (460 letters)



>mm_chr7_120961540_120962399
          Length = 860

 Score =  874 bits (452), Expect = 0.0
 Identities = 455/456 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccaaacttatagtgaactcccagcaagaagtttggctccaaatcaatgacttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gaattctccaaacttatagtgaactcccagcaagaagtttggctccaaatcaatgacttt 601

                                                                       
Query: 65  gctaccacatccccagctctactaactctctgtgcatggagacaggatctggaattctgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gctaccacatccccagctctactaactctctgtgcatggagacaggatctggaattctgc 541

                                                                       
Query: 125 agaggcactagggagggcaaccctcatatacagaggaaaactgatccccatcaggtcctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 agaggcactagggagggcaaccctcatatacagaggaaaactgatccccatcaggtcctt 481

                                                                       
Query: 185 aaaaactttgggttgtctgtttctctttcctgttccatacttatgtctgacataaacacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aaaaactttgggttgtctgtttctctttcctgttccatacttatgtctgacataaacacc 421

                                                                       
Query: 245 gccagacagataggaagctagatccgcctcctggaggtacactttcccacggacccagcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gccagacagataggaagctagatccgcctcctggaggtacactttcccacggacccagcc 361

                                                                       
Query: 305 tcccagattcaccagatcagctaggcctcgggctttatcagaatacaacttatcttgcct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tcccagattcaccagatcagctaggcctcgggctttatcagaatacaacttatcttgcct 301

                                                                       
Query: 365 ctcccaagaggcccagagtgggggttggcaaattccgctcactgtcaagtgtggacagat 424
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 300 ctcccaagaggcccagagtgggagttggcaaattccgctcactgtcaagtgtggacagat 241

                                               
Query: 425 ggctgtctggattagaagcaccttttgtttctggtc 460
           ||||||||||||||||||||||||||||||||||||
Sbjct: 240 ggctgtctggattagaagcaccttttgtttctggtc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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