BAC Information

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BAC

Clone NameMSMg01-408L21
Chromosome7 (Build37)
Map Location 56,697,181 - 56,854,032
singlet/doubletdoublet
Overlap gene5330421F07Rik
Upstream geneMrgprb1, Mrgprx2, Mrgprb2, Mrgprb9-ps, Mrgprb3, EG639116, Zdhhc13, Csrp3, E2f8, LOC100040465, 9130015G15Rik
Downstream geneDbx1, Htatip2, Prmt3, Slc6a5, Nell1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408L21.T7 (MSMg01no408_l21.b1)MSMg01-408L21.TJ (MSMg01no408_l21.g1)
ACCAG506390AG506391
length800785
length of high quality
(start - end)		460 (40 - 499)313 (68 - 380)
definitionCHROMAT_FILE: MSMg01no408_l21.b1 PHD_FILE: MSMg01no408_l21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:49 2005CHROMAT_FILE: MSMg01no408_l21.g1 PHD_FILE: MSMg01no408_l21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,853,594 - 56,854,032)(56,697,181 - 56,697,493)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTAAGTTTCCGTGGGGCTGATGGCTTGAGGTGTGTCCCTCTGCCCTTCTT
TATCTCTGAGGACAGCAAGACATCTCTGCTAGGCCCTGTCCTGGCCAAGA
CCCAGAGGGTAACACAGGAGGGAGCCAGGGATCTTGGAAGACCACTGCCT
ACGCTATCCTTCCATTAGCTTGCCCCAGCCTGCCTGGCCTCCCACCTACC
GATGGTGACATCTGAGGAGCTGTGGGCCTCCAGGAAGCGGTTGAGGTGAT
GCCAGACCTTCGGGATCCAGTTGATGATCTTCACCAGCTCTGCATTGCGC
ACCCGCCCACTGATCTCCGTCTCCATGAGCTTCCTCCTCAGGAAGCGGCC
GAGGAAACCCTTCACGGGCTCCGTGTGGTTGGCACAAAGCACCCACCTGG
GAGAAACAAGGAATGCCTTTCAGTCGCAAGGATGCCCAACGAGATTGGCA
AGCCTCAAAAACTATAGTGTCTGGGAATGGAAAGGTGAGTACCCCTATTG
TAGTGTAGGCTGCATTTATTACATCCTTGANAGGTGACTTGGGTGGTGGG
CCAGGGAAAAAACTTGGGCGAAAGCCCGGTTAAGGGGGCAAACCCATCCC
CCCACTCANAAAAAAGGCCGGGTAAACCTTTAGGGTTGTCTAAAGAAACC
CAAGCACCACTGGTGCCCCACCCTGGTGGAGAGGAAATAACCTCGGGGGG
GGAACCCCCCCCTTAGGGATTCTTAGAGAAAAATATAAACCGCCCTCCCT


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATGATTTTAGGTGAATTCGTGAAGTGAAATTAT
TTAAGAACTTAGCGAAGTATTGGGCACTCCAGTGGTAGTCATCGGGGCTT
TTAACGTATGAGCAAGCAGGAGCTGCACCAGGTGAAGTCACTCAAGGTGA
CTTCTAAGCTGGAAAGCTGGACTTAGGCCCACCTGGTGAGTGCTGTGCGG
CCTGGGTACCATGGAGTAGAAAAAGATGCTCCCAAAAGACACCTCAGCCT
TACAGAGTCACCAAGTGAGTACTTTACTTCAAACACCTATTCCACTGCCA
GCTTGGGGGGGGAGGTGCGGNGCGAGGGGGNGNNNNNNNNNNNNNNNGNN
NNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNGNNNGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGNNNNNNNNNNGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNNNNNNNNNN
NGNNGNNNNNNNGNGGNGGNNNGNNGGGNGGNNNGGGGGGGGGGGGGNNN
NNNNGGGGGNNNGGGGGGGNNGGNNNNGGGGGNGNGGGGGNNGGGGGGGN
GNNGGGNNNGNNGGGGGGNNNNNNGGGGGGGGGGGGGGNNNGGNNNNNGN
GGGGNNNGGGGGGGGGGNNNGGNGGGGGGGGGGGNNGNGGGGNNNNGGGG
NGGGGGGGGGGGGNGGGGGNGGGNGGGGGGGGNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_l21.b1 MSMg01no408_l21.b1 CHROMAT_FILE:
MSMg01no408_l21.b1 PHD_FILE: MSMg01no408_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:49 2005
         (460 letters)



>mm_chr7_56853373_56854232
          Length = 860

 Score =  795 bits (411), Expect = 0.0
 Identities = 432/439 (98%)
 Strand = Plus / Minus

                                                                       
Query: 22  gtggggctgatggcttgaggtgtgtccctctgcccttctttatctctgaggacagcaaga 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gtggggctgatggcttgaggtgtgtccctctgcccttctttatctctgaggacagcaaga 601

                                                                       
Query: 82  catctctgctaggccctgtcctggccaagacccagagggtaacacaggagggagccaggg 141
           |||||||||| ||  ||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 600 catctctgctgggaactgtcctggccaagacccagagggtaacatatgagggagccaggg 541

                                                                       
Query: 142 atcttggaagaccactgcctacgctatccttccattagcttgccccagcctgcctggcct 201
            |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 540 ctcttggaagaccactgcctacgctatccttccatcagcttgccccagcctgcctggcct 481

                                                                       
Query: 202 cccacctaccgatggtgacatctgaggagctgtgggcctccaggaagcggttgaggtgat 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cccacctaccgatggtgacatctgaggagctgtgggcctccaggaagcggttgaggtgat 421

                                                                       
Query: 262 gccagaccttcgggatccagttgatgatcttcaccagctctgcattgcgcacccgcccac 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gccagaccttcgggatccagttgatgatcttcaccagctctgcattgcgcacccgcccac 361

                                                                       
Query: 322 tgatctccgtctccatgagcttcctcctcaggaagcggccgaggaaacccttcacgggct 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgatctccgtctccatgagcttcctcctcaggaagcggccgaggaaacccttcacgggct 301

                                                                       
Query: 382 ccgtgtggttggcacaaagcacccacctgggagaaacaaggaatgcctttcagtcgcaag 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ccgtgtggttggcacaaagcacccacctgggagaaacaaggaatgcctttcagtcgcaag 241

                              
Query: 442 gatgcccaacgagattggc 460
           |||||||||||||||||||
Sbjct: 240 gatgcccaacgagattggc 222


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no408_l21.g1 MSMg01no408_l21.g1 CHROMAT_FILE:
MSMg01no408_l21.g1 PHD_FILE: MSMg01no408_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:49 2005
         (313 letters)



>mm_chr7_56696981_56697693
          Length = 713

 Score =  584 bits (302), Expect = e-171
 Identities = 310/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgattttaggtgaattcgtgaagtgaaattatttaagaacttagcgaagtattgggcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgattttaggtgaattcgtgaagtgaaattatttaagaacttagcgaagtattgggcac 260

                                                                       
Query: 61  tccagtggtagtcatcggggcttttaacgtatgagcaagcaggagctgcaccaggtgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccagtggtagtcatcggggcttttaacgtatgagcaagcaggagctgcaccaggtgaag 320

                                                                       
Query: 121 tcactcaaggtgacttctaagctggaaagctggacttaggcccacctggtgagtgctgtg 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcactcaagatgacttctaagctggaaagctggacttaggcccacctggtgagtgctgtg 380

                                                                       
Query: 181 cggcctgggtaccatggagtagaaaaagatgctcccaaaagacacctcagccttacagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cggcctgggtaccatggagtagaaaaagatgctcccaaaagacacctcagccttacagag 440

                                                                       
Query: 241 tcaccaagtgagtactttacttcaaacacctattccactgccagcttggggggggaggtg 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 tcaccaagtgagtactttacttcaaacacctattccactgccagcttggggggggaagtg 500

                        
Query: 301 cggngcgaggggg 313
           ||| |||||||||
Sbjct: 501 cggtgcgaggggg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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