Query= MSMg01no409_m06.b1 MSMg01no409_m06.b1 CHROMAT_FILE:
MSMg01no409_m06.b1 PHD_FILE: MSMg01no409_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:15 2005
(461 letters)
>mm_chr7_101920014_101920874
Length = 861
Score = 830 bits (429), Expect = 0.0
Identities = 454/469 (96%), Gaps = 15/469 (3%)
Strand = Plus / Plus
Query: 5 gaattcagtagtgtttttc-ttatctagatatctccaaatttgagtttttgtacctttaa 63
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gaattcagtagtg-ttttctttatctagatatctccaaatttgagtttttgtacctttaa 254
Query: 64 tcccacttagtattcaacagggagaacaagttgcaatgcagacactatatactgggatac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tcccacttagtattcaacagggagaacaagttgcaatgcagacactatatactgggatac 314
Query: 124 agaattaaagttatatgattacaatagtattttgtatgttatatgtcatagtacatagtt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agaattaaagttatatgattacaatagtattttgtatgttatatgtcatagtacatagtt 374
Query: 184 tatacatttattatgaacactgagtgagcattacattgagaactatcttatggtgggcat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tatacatttattatgaacactgagtgagcattacattgagaactatcttatggtgggcat 434
Query: 244 gtagattacctggaaatgcatatataaaatgtgtgtg--cgtgtgtgtgtgtgtgtgtgt 301
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 435 gtagattacctggaaatgcatatataaaatgtgtgtgtgcgtgtgtgtgtgtgtgtgtgt 494
Query: 302 gtgtaagt---------tgtgtaagttggctggatttaaaattcaaaagttgtttataga 352
|||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gtgt--gtgtgtgtgtgtgtgtaagttggctggatttaaaattcaaaagttgtttataga 552
Query: 353 aatcatggaaaaatggttcaatgtatatgaagacctgagttcagatctcaggatctacat 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aatcatggaaaaatggttcaatgtatatgaagacctgagttcagatctcaggatctacat 612
Query: 413 gcaaaactatcatgggcaaatacttatctgccattccagtcttgggtgt 461
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gcaaaactatcatgggcaaatacttatctgccattccagtcttgggtgt 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_m06.g1 MSMg01no409_m06.g1 CHROMAT_FILE:
MSMg01no409_m06.g1 PHD_FILE: MSMg01no409_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:15 2005
(531 letters)
>mm_chr7_102103890_102104819
Length = 930
Score = 810 bits (419), Expect = 0.0
Identities = 443/451 (98%), Gaps = 1/451 (0%)
Strand = Plus / Minus
Query: 81 cagagtgatggtttcaatctaaatatttcagtgagagcaagtgctgatggtatgcctcat 140
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 930 cagagtgatggtttcaatctaaatatttcagtgagaccaagtgctgatggtatgcctcat 871
Query: 141 gtcagagattaaataaagcccattcaaagatggccacaaccaactccctgcaacctgtga 200
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 gtcagagataaaataaagcccattcaaagatggccacaaccaactccctgcaacctgtga 811
Query: 201 ggatgttagcctgtatgacagaaagactttgcatatgaagactgattaagtgttttatga 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 810 ggatgttagcctgtatgacagaaagactttgcatatgaagactgattaagtgttttagga 751
Query: 261 cagaaagaggatgctggatttcttgtggggaactgttgtctaaatatatgttcaagcaaa 320
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 750 cagaaagaggatgctggatttcttgtggggaactgttgtctgaatatatgttcaagcaaa 691
Query: 321 gatgactaagtcagcaaaatgagagagtaagagaaagcgaagaggccacatgatgtgatg 380
||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 690 gatgactaagtcagccaaatgagagagtaagagaaagcaaaaaggccacatgatgtgatg 631
Query: 381 ccatgagcctaagacgtgaacagaaagggaatgccttagagcttcttccctctccttccc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ccatgagcctaagacgtgaacagaaagggaatgccttagagcttcttccctctccttccc 571
Query: 441 caagccctcagtcacaagaaagtgccaatcatactgaaatctcactttaattctacacat 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 caagccctcagtcacaagaaagtgccaatcatactgaaatctcactttaattctacacat 511
Query: 501 ttttcttttgtgctttttatgcatataagtg 531
||| |||||||||||||||||||||||||||
Sbjct: 510 ttt-cttttgtgctttttatgcatataagtg 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 930
Length adjustment: 10
Effective length of query: 521
Effective length of database: 920
Effective search space: 479320
Effective search space used: 479320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
