BAC Information

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BAC

Clone NameMSMg01-409N24
Chromosome7 (Build37)
Map Location 81,429,599 - 81,430,005
singlet/doubletsinglet
Overlap geneSlco3a1
Upstream gene4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik, St8sia2, LOC100042127, LOC100042140, LOC546979
Downstream geneEG665308, EG665641, 0610006L08Rik, Sv2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409N24.T7 (MSMg01no409_n24.b1)MSMg01-409N24.TJ (MSMg01no409_n24.g1)
ACCAG507256AG507257
length804759
length of high quality
(start - end)		413 (52 - 464)401 (56 - 456)
definitionCHROMAT_FILE: MSMg01no409_n24.b1 PHD_FILE: MSMg01no409_n24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:23 2005CHROMAT_FILE: MSMg01no409_n24.g1 PHD_FILE: MSMg01no409_n24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGA
TCCGCGGAATTCACTGCAGATAACGGCATTTCTGTCCCTGGCTGTCCAGC
TGTTTACGGACTGCTTTGAGACTACGCTGGGTCACGTGGCTCCATAGTGC
AGTGGTTCAAACCACAGGAACACAAATCCCATCTCTGCCTTCATTATCCA
GACAAAAATCATTGAACCCTCTGTGCCTGATGCTGCCTAAGTTAATATGT
GAAAAGTATTTAGGATGCTGTGCATTTACCTGGTAACTGTAAACACAAGA
TAATTGACAGATGTCATTATTCTGAGAAGGGATAAAGTCATTCCTGAAGG
CATATTAGTATTAGTTGGCCTCCTAGAGGGAATGCCAAAGAGGCGAGTGG
CTCTGCTCATAGCCCTTTTGCAGGGGTTTGCAGGGGCGGTGTGAGCTGCC
AACTGGAGGGACCTGGGACCAGAAGTAGAATGGGAATGGGTTATACTGTG
TGAGCGCAAAAACGGACATTTATATTTTGAAATGAGAAAAGGGACAAACA
TTCTCGTGGTTACAATTTGTCCAGCTCTTAAAATGGGGGGGAATTCTTTT
CCTGCGGGGTGGGGCCCCAAATAACACCTTTTGTTAATTGAATAACTAAT
GTGTAAGGAAAATTGTTCCCCTCTCCTTAATCCTCTGTAGGGTAAACCTC
TAAGGGTTATATTTCTTCGGTTCCTTCTCCATAAAAAATGCGTATTCTAT
CATCCTCTTACATATAAACTCGGCCCCTTAAATCCTCTCCTCCACTTGAG
ACTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACTCAGCCAGGGTCCAGTGAATTTGAGCCCAGAGCCCTTATAATG
AATGCTTTCTACCTGTGATGGTTAATGTTGACTGGATTTAGAATTATCTA
GGAGGCAAGCCTGTGGGGGTGTCAGGGAGGGCATTTGCAGAGAGATTTAT
CTGGGGATGGACGGGCTACACCAAATGTGGACAGAGTGACTCCCCAAACT
GGGGCCCTGCACTGAATAAAAAGAGGAAATCAGACTGAGCGCAGCCATTC
ACTCTCTGCCTCCTGACTGTGGACAGACACAGTACATTATGACCAGCTGC
CTCTTGCTCCTTCTGGTCTACCTTTCTCCACCATGATGCACAGTGACCTC
AAACTAAACCTTTGCCTTTAAGTTACTTTCTGTCATACATTTTGTCATAG
CAGGGGGAAATTTATTAATGTACTCATTAGGTGACTGAAAATTTAAAGAT
TCCCGAGACTGCAGGGAGCTACCGTTTCCTGCTTAATATTATGGGCAAAT
CACACCCCCCCGGGGTTTATAAATCCCCAAGGTGCACCGCAGAATGGTTG
TCATCATTCCTTAACCACTGTTCTTTGGGTTTATTTGCCTTCTCTATCTT
CCCTGTGTTGTCTCCCTTTTTTTTTTCTTTCAACTTTGTTTTTTCTCCTT
TTATATTTCCGCCTTATCTCTATTCAACACGCCTTTCCTCGGCTGCTCCC
TTCTCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_n24.b1 MSMg01no409_n24.b1 CHROMAT_FILE:
MSMg01no409_n24.b1 PHD_FILE: MSMg01no409_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:23 2005
         (413 letters)



>mm_chr7_81429394_81430205
          Length = 812

 Score =  766 bits (396), Expect = 0.0
 Identities = 405/408 (99%), Gaps = 1/408 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcactgcagataacggcatttctgtccctggctgtccagctgtttacggactgctt 65
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcactgcagagaaaggcatttctgtccctggctgtccagctgtttacggactgctt 265

                                                                       
Query: 66  tgagactacgctgggtcacgtggctccatagtgcagtggttcaaaccacaggaacacaaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgagactacgctgggtcacgtggctccatagtgcagtggttcaaaccacaggaacacaaa 325

                                                                       
Query: 126 tcccatctctgccttcattatccagacaaaaatcattgaaccctctgtgcctgatgctgc 185
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 326 tcccatctctgccttcattatccagacaaaa-tcattgaaccctctgtgcctgatgctgc 384

                                                                       
Query: 186 ctaagttaatatgtgaaaagtatttaggatgctgtgcatttacctggtaactgtaaacac 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctaagttaatatgtgaaaagtatttaggatgctgtgcatttacctggtaactgtaaacac 444

                                                                       
Query: 246 aagataattgacagatgtcattattctgagaagggataaagtcattcctgaaggcatatt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagataattgacagatgtcattattctgagaagggataaagtcattcctgaaggcatatt 504

                                                                       
Query: 306 agtattagttggcctcctagagggaatgccaaagaggcgagtggctctgctcatagccct 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtattagttggcctcctagagggaatgccaaagaggcgagtggctctgctcatagccct 564

                                                           
Query: 366 tttgcaggggtttgcaggggcggtgtgagctgccaactggagggacct 413
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttgcaggggtttgcaggggcggtgtgagctgccaactggagggacct 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 812
Length adjustment: 9
Effective length of query: 404
Effective length of database: 803
Effective search space:   324412
Effective search space used:   324412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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