BAC Information

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BAC

Clone NameMSMg01-410K24
Chromosome7 (Build37)
Map Location 34,520,480 - 34,520,982
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043845, LOC100043373, LOC668410, EG624439, LOC100043376, LOC100043379, LOC100043383, EG668411, LOC100043850, LOC100043386, LOC668416, EG668526, LOC100043388, LOC270234, EG668419, EG668422, EG546954, LOC100043856, LOC100043857, EG545947, EG434676, EG668431, Abpd, EG545948, LOC435963, LOC435962, EG626970, LOC100043859, LOC627004, LOC100043398, LOC100043401, Scgb2b1, LOC668440
Downstream geneAbpz, LOC100043860, LOC627079, LOC635803, Abpg, LOC100043864, LOC100043865, Abpb, Abpa, LOC100043866, LOC100043867, LOC100043868, Wtip, Sae2, LOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734, Lsm14a, LOC668460, LOC668464, Kctd15, Chst8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410K24.T7 (MSMg01no410_k24.b1)MSMg01-410K24.TJ (MSMg01no410_k24.g1)
ACCAG507878AG507879
length758762
length of high quality
(start - end)		504 (50 - 553)532 (77 - 608)
definitionCHROMAT_FILE: MSMg01no410_k24.b1 PHD_FILE: MSMg01no410_k24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:30 2005CHROMAT_FILE: MSMg01no410_k24.g1 PHD_FILE: MSMg01no410_k24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:30 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAATCCGC
GGAATTCAATCAGGTATTGACGCAGGAGCTGATGCAGAGGCCATGGAGGA
ATGTTACTTACCGGCTTGCTTCCTCTGGCTTGCTCAGAATACCAGCCCAG
AGATGGTGCCGCCCACAAAGTGCCTTTCCCCCTTGATCACTAATTGAGAA
AATGCCTTACAGCTGGATCTTGTGGAGGCATTTCCCCAAATGAAGCTCCT
TTCTCTGTGATAACTCCAGCCTGTGTCAAGTTGGCACACAAAACCAACCA
GTACAAGTGTTAAAGGGCGCAGATGGTCTATTTGCTCAGGAGTCATTAGT
TTGCCTGTGACAGCTTTGTCCCTGGGGAGGCCATTTCACCTTCCTAAGGA
TCACCCACCTTTCCTTAGGAAGCCTTAGATGTTGTCATGTCACATCAGGA
AACAGATGAACAAAGCAATGGCTCCAATCTTACACACTGACCAATGTGTC
CTGTTTGTATAACTTTCAGTCCTTCAGCCTGCTCACCAGCACTTTCTCTA
TTCAATGAGTCTTCTCAATTTTTGCCACTATTATACAGAATAAGAGTTGT
GCTGNTATGCTATATGNTCCTTATAACTGATGGAGTTCATCATTTTTATT
TACACTGTGTGTCTTTCCTCTCCCCTTTAACTGTGTGACTGCTTTTGNAA
GGTGGAAGGTTGACGGAAAGTGAGCTGGTCCTCCCCCCCTGGGTGGAAGG
AAATCAAA

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTGACATTAATAGATGTGACAT
TAATAGCTGATCCATAAGTTTAAAATGTACTATTACTTTGCTGACCAAAT
CATAATAACCCACCATGGGGCAATCAAAGTGAGTCACTAGGCCAAAGGGT
TACTTAGTCACTATAAAAACCAACCAATGCCTGAAAGGGTTACTTGCTAC
ACCAAAGAGAACCCTGTTGCTCAAATCTGCCCCTTACAAAGGTATAAAAA
GTGTGTTCTTTCTTTGTTCTGGGTCTCTCCTCTGGCCTGCATGCTGCGAG
GGGAGTCCCCAACATGTTGGATCAATAAAAATCCTCATGCATTTTGCAGC
AATAGTGGTGGTCTCTGTGGTCCTTGTGAGTAAGAGTCTTTTGACGAACT
CCAACAGTAGGTTGTTGCTCTTAGGAGGTTGTCAACACAAGCTAACTATG
ATTTGCATAGGGCTCTAGCAAGGGCATGATTTTATCAACTGCAGATAGTT
TATGTGATTGTGTGATATTTTGAATTCTGGGAACTCTTCAGAAGGTATAT
GAACACTAGGGCTTCAAGAGGTAGCGCCTTAAACAAACGTTAGTTGGTAG
CTGTTTTGAGTGATGTATTCTTAAGCAGTCATGCTCCCAGAAAAAAAACC
AGAATAAAACATTCTATATCCCTGAGGATGAAGATCAAAAATGCCCCCAA
AAGTCAACAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_k24.b1 MSMg01no410_k24.b1 CHROMAT_FILE:
MSMg01no410_k24.b1 PHD_FILE: MSMg01no410_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:30 2005
         (504 letters)



>mm_chr7_34520279_34521182
          Length = 904

 Score =  926 bits (479), Expect = 0.0
 Identities = 497/503 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggaattcaatcaggtattgacgcaggagctgatgcagaggccatggaggaatgttactta 61
           ||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcaatcaggtaaggaagcaggagctgatgcagaggccatggaggaatgttactta 261

                                                                       
Query: 62  ccggcttgcttcctctggcttgctcagaataccagcccagagatggtgccgcccacaaag 121
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 262 ccggcttgcttcctctggcttgctcagaataccagcccagagatggtgccgcccacaagg 321

                                                                       
Query: 122 tgcctttcccccttgatcactaattgagaaaatgccttacagctggatcttgtggaggca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgcctttcccccttgatcactaattgagaaaatgccttacagctggatcttgtggaggca 381

                                                                       
Query: 182 tttccccaaatgaagctcctttctctgtgataactccagcctgtgtcaagttggcacaca 241
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tttccccaactgaagctcctttctctgtgataactccagcctgtgtcaagttggcacaca 441

                                                                       
Query: 242 aaaccaaccagtacaagtgttaaagggcgcagatggtctatttgctcaggagtcattagt 301
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 442 aaaccaaccagtacaagtgttaaagggtgcagatggtctatttgctcaggagtcattagt 501

                                                                       
Query: 302 ttgcctgtgacagctttgtccctggggaggccatttcaccttcctaaggatcacccacct 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttgcctgtgacagctttgtccctggggaggccatttcaccttcctaaggatcacccacct 561

                                                                       
Query: 362 ttccttaggaagccttagatgttgtcatgtcacatcaggaaacagatgaacaaagcaatg 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttccttaggaagccttagatgttgtcatgtcacatcaggaaacagatgaacaaagcaatg 621

                                                                       
Query: 422 gctccaatcttacacactgaccaatgtgtcctgtttgtataactttcagtccttcagcct 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gctccaatcttacacactgaccaatgtgtcctgtttgtataactttcagtccttcagcct 681

                                  
Query: 482 gctcaccagcactttctctattc 504
           |||||||||||||||||||||||
Sbjct: 682 gctcaccagcactttctctattc 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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