BAC Information

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BAC

Clone NameMSMg01-410L23
Chromosome7 (Build37)
Map Location 126,529,996 - 126,743,209
singlet/doubletdoublet
Overlap geneGp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2
Upstream geneSyt17, LOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139, LOC100042871
Downstream geneAcsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410L23.T7 (MSMg01no410_l23.b1)MSMg01-410L23.TJ (MSMg01no410_l23.g1)
ACCAG507924AG507925
length780775
length of high quality
(start - end)
500 (50 - 549)459 (79 - 537)
definitionCHROMAT_FILE: MSMg01no410_l23.b1 PHD_FILE: MSMg01no410_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:34 2005CHROMAT_FILE: MSMg01no410_l23.g1 PHD_FILE: MSMg01no410_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:34 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(126,742,853 - 126,743,209)(126,529,996 - 126,530,454)
sequence
NNTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCG
CGGAATTCTTTCTCAATCTCTCGTTCTTATAAAGCCACTAATCCCATCAC
GAGGGATCCACCTTCATGAACTCCACTTATCCTGGATAAGAAGGCCAGTT
CAAGTACAGTCAACATATGAACTTGGGCACAATTTAATCCTATCCATCAA
ATTCTTTCAACACCCAAGTTCTTCAACTAAAGGTCTTACATGTATTGGAG
CGTGTATGTGTGTGTTTGTGTGTGAGTGCACACATGTATTCCACTACTAT
TCTTTCAAATTCTCAGCCCACAGAATTTGTATTCATAGTGAAATGGTTGT
TTTAAATGGCCCTGTTTGAGGTTTATTTTTTATGCCAAAGTATGCAAACA
TGATAGGCTGGAGCAGAATGAAGGGAGTCAGGGTCATAACTGAGGGACAG
CATTGATTCCTCTTAAAGGTAAAGGGCTTCCGCTATGCACGACACCGAAA
GCAGGGCTCATAGGCTGGACCCAGAGTAATGGGATATAGTAAAACTCATT
CTCAAGGTGGGAGAGACACCTTATAAAAGGAAGGTGGGAGCATTGCTTGT
CCTCCCAGTGCTAGGGAAGCAGAGACAGGAAAAACCCTGCTCCTAAAGGG
GGATTTCCCAGCCCATGGATATACTTTTTTCTTAAATGAAATGCAACAGG
GTTTCTTACAAAAAACTTCCCTGCGTTCCCTTTCCGTGTTTTATTCCCAA
CCCTCATTGCGCATTGTACCCCTTACCTCN
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTTTAAAAACATTTCATTT
CTTGTTCAGGATTTTAATGAAGACCACTTTTTAAAAGCTATATCTGAGGG
AAGCAGAAAGCTGACTCCAGGTAAATGGCAGGTGCGCATGGATCGACTCT
CCACGGGTTCTTTCTTTCCTTGCACCTCTTGAGGGCAGAGAGGCAGTTGA
AGGTTCTAGATCTGCTCAAGAACTACAGACCTAGTTTCCCTAAGCCACAA
CACCAGGAACGGTACTGGGACGTAAGCCAAGCCTTGCAAACCAACCAACA
AAACAAAACAACCTTTATGCTGTATACCCCTGGGCTTTTGAAGCAGTTTT
GGAGGAGGATGGGAGGAACAAGAACTCAAATGGTAGAGCCCTTGATTGCA
TGCATTGAATTAAACCAGACCCCAGTGACTATGCTTCTGTAACTCACCTG
CTTGTTCAGGATGGCGTCTGGTGCTCTCCATGATGTACTGGGTAGGTAGA
GCATGACTTTGTATTACTCAGNTCTTAAGATGCTGAATCATTACACATGG
AGGGACCTATGGCTCCCGCTGCATATGTAGCAGAGGATGGCCCTATCTGC
CCCAGGGAGGGGAGGTCCTTGGTCCCGGGAAGGCCTATTGACCCCCTCTA
CTGCAAGGGTCGGTTGATGAACACCCATTCCCTCCCCTTTTCCCCTTTCT
TCCCTTATCTTCTTCACTTTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_l23.b1 MSMg01no410_l23.b1 CHROMAT_FILE:
MSMg01no410_l23.b1 PHD_FILE: MSMg01no410_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:34 2005
         (500 letters)



>mm_chr7_126742676_126743575
          Length = 900

 Score =  600 bits (310), Expect = e-175
 Identities = 346/358 (96%), Gaps = 1/358 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctttctcaatctctcgttcttataaagccactaatcccatcacgagggatccacc 63
           |||||||||||||||| || |||||||||||||||||||||| |||| ||||||||||||
Sbjct: 534 gaattctttctcaatcact-gttcttataaagccactaatcctatcatgagggatccacc 476

                                                                       
Query: 64  ttcatgaactccacttatcctggataagaaggccagttcaagtacagtcaacatatgaac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ttcatgaactccacttatcctggataagaaggccagttcaagtacagtcaacatatgaac 416

                                                                       
Query: 124 ttgggcacaatttaatcctatccatcaaattctttcaacacccaagttcttcaactaaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ttgggcacaatttaatcctatccatcaaattctttcaacacccaagttcttcaactaaag 356

                                                                       
Query: 184 gtcttacatgtattggagcgtgtatgtgtgtgtttgtgtgtgagtgcacacatgtattcc 243
           |||||||||||||| |||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct: 355 gtcttacatgtattagagcttgtatgtgtgtgtttgtgtgtgtgtgcacgcatgtattcc 296

                                                                       
Query: 244 actactattctttcaaattctcagcccacagaatttgtattcatagtgaaatggttgttt 303
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 295 actactattctttcaaattctcagcccacagaatttgtaaacatagtgaaatggttgttt 236

                                                                     
Query: 304 taaatggccctgtttgaggtttattttttatgccaaagtatgcaaacatgataggctg 361
           ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 235 taaatggccctgtttgaggttaattttttatgccaaagtgtgcaaacatgataggctg 178


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no410_l23.g1 MSMg01no410_l23.g1 CHROMAT_FILE:
MSMg01no410_l23.g1 PHD_FILE: MSMg01no410_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:34 2005
         (459 letters)



>mm_chr7_126529796_126530654
          Length = 859

 Score =  833 bits (431), Expect = 0.0
 Identities = 452/459 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttttaaaaacatttcatttcttgttcaggattttaatgaagaccactttttaaaagc 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttttttaaaacatttcatttcttgttcaggattttaatgaagaccactttttaaaagc 260

                                                                       
Query: 61  tatatctgagggaagcagaaagctgactccaggtaaatggcaggtgcgcatggatcgact 120
           ||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 tatatccaagggaagcagaaagctgactccaggtaaatggcaggtgcgcatggagcgact 320

                                                                       
Query: 121 ctccacgggttctttctttccttgcacctcttgagggcagagaggcagttgaaggttcta 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 ctccacgggttctttctttccttgcacctcttgagggcagagaggcagctgaaggttcta 380

                                                                       
Query: 181 gatctgctcaagaactacagacctagtttccctaagccacaacaccaggaacggtactgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatctgctcaagaactacagacctagtttccctaagccacaacaccaggaacggtactgg 440

                                                                       
Query: 241 gacgtaagccaagccttgcaaaccaaccaacaaaacaaaacaacctttatgctgtatacc 300
           |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 441 gacgtaagccaagccttgcaaagcaaccaacaaaacaaaacaacctctatgctgtatacc 500

                                                                       
Query: 301 cctgggcttttgaagcagttttggaggaggatgggaggaacaagaactcaaatggtagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctgggcttttgaagcagttttggaggaggatgggaggaacaagaactcaaatggtagag 560

                                                                       
Query: 361 cccttgattgcatgcattgaattaaaccagaccccagtgactatgcttctgtaactcacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccttgattgcatgcattgaattaaaccagaccccagtgactatgcttctgtaactcacc 620

                                                  
Query: 421 tgcttgttcaggatggcgtctggtgctctccatgatgta 459
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcttgttcaggatggcgtctggtgctctccatgatgta 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)