BAC Information

Click to search

BAC

Clone NameMSMg01-411G23
Chromosome7 (Build37)
Map Location 67,288,327 - 67,288,666
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668815, EG668818, Ube3a, LOC100040985, LOC100041010, LOC100041029, LOC100041051, Pwcr1, LOC664788, Snrpn, Snurf
Downstream geneEG664849, LOC100041201, LOC100041211, LOC664896, LOC100041229, LOC625287, D0Kist2, LOC100041248
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411G23.T7 (MSMg01no411_g23.b1)MSMg01-411G23.TJ (MSMg01no411_g23.g1)
ACCAG508446AG508447
length768762
length of high quality
(start - end)
570 (44 - 613)551 (58 - 608)
definitionCHROMAT_FILE: MSMg01no411_g23.b1 PHD_FILE: MSMg01no411_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:28 2005CHROMAT_FILE: MSMg01no411_g23.g1 PHD_FILE: MSMg01no411_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:29 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCCAAGTATTTCCTGGTTGGTTAATAAAAACTTTCTATCAGTTTAAG
CTCATGTCTAAGCAGTTTTCTCTGGTGAAAGCCCTACAACATTTCTGGGC
GTTCCACCAAAATCTCAGCGACCAAACCTCAAAACACCGTGTGTCTCAGA
ATCACTTGGAGGGATGTGATGGCCAAGGGACTTCTAGGAGGTACAGAGCC
TGAGATGTTACAGGTCCGGAGGGCTCTGTTTGATCAAATGCTGTCTAATT
CCTTACAGGTGTCTGATACCTCTTTTGTTTCTAAATTAGACAGTCATCTG
GTCTTTTACCTCCAGAGGTAAGTCTGGTTAAGGCATGTTTGGACACACAG
GTGAGGTCAGACAAGGATGCTGATTCAATGTGCAGGATCCATGTGAACTT
CACTAGATCCTTCTGTCTGCTCAGGTGTATGAAAGTGTGTTAGCCACTTC
CTGGTTGTCTTTTTTGTGTCTGTATGTGTTTTTGTCAGTCCTTTCTCCCT
CTATTGACCAGTGGCTCTCTTTGGTGTAAGAAACCTCTCACTTAAGACCT
GTGTCCCATCCTGTTGGGGACCTGAATCCTTTTGCCCCTCCCCCCTCCCA
TGTCACCCAGAATAACCTTAAAAAATCCTCCATTTGTCCCACTCCTGGAG
CAGGAGCACTTGCTTCTTTAATTGCTTGAATCCTGCTCAACAAGGTTGGT
TTCAGTGTGGAGCAAGAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTGCAGTTCATATATATATATATATGTATATATATATATATATA
TATATATATATATATATACATATATATATATATATATATACCAAAACTAT
ATCTAAATAGAAGTGGGAGACAAATTTTATAGGAGATACTTGCTTCAGTG
ACATAATTTGTCCTCAAGTATTATGCCAATTACAGGGTATGAGAGTAGGT
CGCAGTTACTTTTAGCAATTTTTTTCTTTTAATATTCATTCCTCTTTTTT
AGATTGTCTTTTAAGCAGTTTGGTATGATATCAAGAGAAACTTCAAAATA
GTCTTCTGGTGGAGACATTTTGATTATACCTGAGTACAGCAGAGGGTCCT
GACTATTGATTTACAGCCAAAGAGCAAGGGGATGGAAAATAAGTATTCAG
GAAGAAAGAGAGAAGGAGAAAAGGTAGGAGGAAGAGGAGGAGGAGAGGAC
TCCAATAATCAGAGACAAGGAAAAGCTCAAGAAACTTGACCAAAAAAAAA
AAAAAGATTATCACAGGTAAATTGGAAATCTATGCTATGGAAGGAGGGGG
GTTGCAAAAACTGAACATATATCAGCTAGTCTTCCGTCAGAAAAATGCAC
ATTGCTTACACGTACACAATTCTTTATTATCTCCAGATAGTGTACCCTTC
ACCCTTTTGGATTAATTTTAAGACGCATTTTATCCCCACCTGCTTCTACT
TCCCCCAATTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_g23.g1 MSMg01no411_g23.g1 CHROMAT_FILE:
MSMg01no411_g23.g1 PHD_FILE: MSMg01no411_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:29 2005
         (551 letters)



>mm_chr7_67288076_67289026
          Length = 951

 Score =  582 bits (301), Expect = e-170
 Identities = 332/345 (96%), Gaps = 5/345 (1%)
 Strand = Plus / Minus

                                                                       
Query: 203 ttttagcaatttttttcttttaatattcattcctcttttttagattgtcttttaagcagt 262
           ||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 591 ttttagcaatttttttcatttaatattcattcctcttttttagatcgtcatttaagcagt 532

                                                                       
Query: 263 ttggtatgatatcaagagaaacttcaaaatagtcttctggtggagacattttgattatac 322
           ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ttgttatgatagcaagagaaacttcaaaatagtcttctggtggagacattttgattatac 472

                                                                       
Query: 323 ctgagtacagcagagggtcctgactattgatttacagccaaagagcaaggggatggaaaa 382
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 471 ctgagtacagcagagggtcctgactattcatttacagccaaagagcaaggggatggaaaa 412

                                                                       
Query: 383 taagtattcaggaagaaagagagaaggagaaaaggtaggaggaagaggaggaggagagga 442
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 411 taagtattcaggaagaaagagagaaggagaaaaggtaggaggaagagaaggaggagagga 352

                                                                       
Query: 443 ctccaataatcagagacaaggaaaagctcaagaaacttgaccaaaaaaaaaaaaaagatt 502
           |||||||||||||||||||||||||||||||||||||||||     |||||||||| |||
Sbjct: 351 ctccaataatcagagacaaggaaaagctcaagaaacttgac-----aaaaaaaaaatatt 297

                                                        
Query: 503 atcacaggtaaattggaaatctatgctatggaaggaggggggttg 547
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 atcacaggtaaattggaaatctatgctatggaaggaggggggttg 252


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)