BAC Information

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BAC

Clone NameMSMg01-411J18
Chromosome7 (Build37)
Map Location 89,681,295 - 89,681,637
singlet/doubletsinglet
Overlap geneAdamtsl3
Upstream geneFsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3
Downstream gene1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik, EG666160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411J18.T7 (MSMg01no411_j18.b1)MSMg01-411J18.TJ (MSMg01no411_j18.g1)
ACCAG508579AG508580
length760773
length of high quality
(start - end)
528 (46 - 573)239 (77 - 315)
definitionCHROMAT_FILE: MSMg01no411_j18.b1 PHD_FILE: MSMg01no411_j18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:43 2005CHROMAT_FILE: MSMg01no411_j18.g1 PHD_FILE: MSMg01no411_j18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGGTTTACAAGCAGGAAGGAAATCACTGGAGTCTGGGGCCAGGT
AGAGAACTGGGCCTGTTTGATAGACACAGTTCACACTGAGAATGATGGAA
ACACTCTGGACAGGTAAGACAGGCGTGTGAATATTCTTAGTGCCGATGAG
CTGAGTGCTTTCAAATGGTTAAAGAGCCAAGCCTTGCATTATGAATGTAA
TACCACAGGAAGTAGAAAAACTGGATTACTGTTGCAAAAGGAACAAAAAA
AATGGCAACACTCCACTTTTTTATCCCTGACTCGGAGTTTATTACAACTT
TGGTTCATTTTTGCTTGTTTTTAGATTTTTGAAACTGAGTCTCACAGTGT
AGCTCAGAATGACCTTGGAACTCACTCTGTAGCCCAGGCTGTCTTTAAAC
TTGTGGCAATCCTCCTGCTTCAACTTCTTGAGTGCTACAATTGTAGATGT
GAGGCACCAGATCCCAGTTCATTACACGATAGAAACAACCCAAATGAGCT
TGATCGAAGTGATCTGAGGACCACATTTTTTAAAAGCTAAAGTTTGTTTC
TCTTTTAGAGAGAGAAAAACTGAAGGATGCAGACCTGCTCTGATGTGATG
CCCTGTGTTTAGTCCGCGGCATGGGGCTGTGCCTCTTGTGTATGTCCACC
ATTAGGTGTATTGAACTTTATTGTATTCTTGAGGTGCTCTATTGTGTCTC
CTCGAGGGTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAGCCTGCCTGCTCAGCAGAGTT
CTTCAAGGTTTAGATAACCATGCCCCCTTTGTTGCTGTTTTAAACTCAGA
ATCATACTAATAGGTTTTAAAACATTTCTTGTGTTCCTGGCATTAGCTGT
ACTTGGCCATGGGGTATTGTGGGTTTAATGTTTGGCTGGATTTGGTTTGA
AAATATTTTATTGGGAATTGCTAAGTGTGAATCCATAAGAGCTGTTAGTT
CACACGGCAGCTTTCATTTTTCTTTAACGTCATAAAATGAGCAGGGGCAC
AGGCCTTATCAGTTTCTCTCATTTTTAGTCAGCTTTAAGATCAGAGAAAC
AAAAACAAAACAAACCAAAACCAAACAAACAAAGGATCAGAGAGACAACC
AATTACTCATAAGTTTGAAAGTATTTGCCAGTGAAGTAAAAGAAGCACAG
AATGCTTCTGGAAAGTATTTCTTTGACGACTGCCTTTTTAGCACCTATTA
TCAATACCCCTACTAACACCCCCTATATACTACTAGTACCATTCCCCATC
ATTTACCCACCCCTCACTTATTTATTAATATTACTAGCCCACTCAATTAT
AAATACTTTTATATCCCTTATTATACAATGACCATAATACTTATTATTAT
TTCTTCCTCGCGTGTACCCGTGTCTCCCTCCCCCTTCTTTTTTTTCCCCT
TAACAGTATTTTCCACACCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_j18.b1 MSMg01no411_j18.b1 CHROMAT_FILE:
MSMg01no411_j18.b1 PHD_FILE: MSMg01no411_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:43 2005
         (528 letters)



>mm_chr7_89681295_89682222
          Length = 928

 Score =  594 bits (307), Expect = e-174
 Identities = 334/349 (95%), Gaps = 14/349 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatggtttac---aagcaggaaggaaatcactggagtctggggccaggtagagaa 61
           ||||||||||   ||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gaattcatgg---acaaaaagcaggaaggaaatcactggagtctggggccaggtagagaa 287

                                                                       
Query: 62  ctgggcctgtttgatagacacagttcacactgagaatgatggaaacactctggacaggta 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ctgggcctgtttgatagacacagttcacactgagaatgatggaaacactctggacaggta 227

                                                                       
Query: 122 agacaggcgtgtgaatattcttagtgccgatgagctgagtgctttcaaatggttaaagag 181
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 agacaggagtgtgaatattcttagtgccgatgagctgagtgctttcaaatggttaaagag 167

                                                                       
Query: 182 ccaagccttgcattatgaatgtaataccacaggaagtagaaaaactggattactgttgca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ccaagccttgcattatgaatgtaataccacaggaagtagaaaaactggattactgttgca 107

                                                                       
Query: 242 aaaggaac-aaaaaaaatggcaacactccacttttt----tatccctgactcggagttta 296
           |||||||| ||||||||||||||||||||||   ||    ||||||||||||||||||||
Sbjct: 106 aaaggaacaaaaaaaaatggcaacactccac---ttccaatatccctgactcggagttta 50

                                                            
Query: 297 ttacaactttggttcatttttgcttgtttttagatttttgaaactgagt 345
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  ttacaactttggttcatttttgcttgtttttagatttttgaaactgagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)