BAC Information

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BAC

Clone NameMSMg01-411N16
Chromosome7 (Build37)
Map Location 136,044,747 - 136,045,271
singlet/doubletsinglet
Overlap genenone
Upstream geneBckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip
Downstream geneLOC210714, LOC100043144, Ppapdc1a, Brwd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411N16.T7 (MSMg01no411_n16.b1)MSMg01-411N16.TJ (MSMg01no411_n16.g1)
ACCAG508766AG508767
length764752
length of high quality
(start - end)
480 (69 - 548)525 (81 - 605)
definitionCHROMAT_FILE: MSMg01no411_n16.b1 PHD_FILE: MSMg01no411_n16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:02 2005CHROMAT_FILE: MSMg01no411_n16.g1 PHD_FILE: MSMg01no411_n16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGACGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTTTTTTAGGATCCAGCAATACCTCTCCTGGTCA
TATATCCAGAAGATGCCCCAACTGGTAAGAAGAACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGAAATGGATACAGAAAATGTGGTATATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCTTAGGCAAA
TGGGTGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACTAAG
GAACTTCACCCATATGTACTCATGATAAGTGTATATTATCCCAACATCTA
TGATATTCCTAGATATACGACACCATTTTCTAAACCTCTGGAAACTCCTG
AAAATTGAACACTGAATTGCGGTATCTTTGCCCCTCCTTTCATTTGGCAC
AAACACACCCCTGN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATGCTCAGCAAGGCTCT
AGGCAGCCCTGCCACTCAGGATCCCCTGAGCTGGGAGTACCAGATGGGTG
GACAGCCAACAGAAATCCTTAGGAGCTCAGCAAGAGTGCTAAGTGTGACA
GCAACAAACTTTAGTGACCACTAAGTCACTACTCTATGTAAACTCTGTCT
TCAAGGAGGACTCCAGAGTCGTTCTTGGTTAGAAAAGGTTGGTCTTTAAT
TGAGCTTTGGCGCCTCTGTTTTTTGATGCATGCCTAATGATCATTTGCCT
TCTGGTCTTGCTCTGGAATGTCGCAACCAGCGCTGTCAGGAATCAAAATA
ACCCTCTGGGCTTTGTAAAGCCCTGGGGTTGGACTGTTGCTGTCTGAGCT
TTCTGTGCCCATTTGAGAGATGCTTCTTATTATTTCCCAACTTGCAAATC
AGTTCCAGCAAATATGTCTGTCCTTTCCCACTCTACCCTGCCATGTCACT
TCATTGCTTTTGCCAATACTGAGCTTTCAATAGTTAAAGGCTATAGAATA
GATAGACATATATAGACCTTCTCAGGAATAGGATGCAGTTCAAGAAGTCT
TCATTATTCGTGGTGGNGACACTCACCATGGGGAGTGACTTGCAGGTATG
GCCAAAGTATATGAAAGAATGGTGTACACCATATATGAACAGAATGACTA
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_n16.g1 MSMg01no411_n16.g1 CHROMAT_FILE:
MSMg01no411_n16.g1 PHD_FILE: MSMg01no411_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:02 2005
         (525 letters)



>mm_chr7_136044547_136045471
          Length = 925

 Score =  946 bits (489), Expect = 0.0
 Identities = 516/525 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttatgctcagcaaggctctaggcagccctgccactcaggatcccctgagctgggagtac 60
           |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 cttatgttcagcaaggctctaggcagccctgccactcaggaacccctgagctgggagtac 260

                                                                       
Query: 61  cagatgggtggacagccaacagaaatccttaggagctcagcaagagtgctaagtgtgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagatgggtggacagccaacagaaatccttaggagctcagcaagagtgctaagtgtgaca 320

                                                                       
Query: 121 gcaacaaactttagtgaccactaagtcactactctatgtaaactctgtcttcaaggagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaacaaactttagtgaccactaagtcactactctatgtaaactctgtcttcaaggagga 380

                                                                       
Query: 181 ctccagagtcgttcttggttagaaaaggttggtctttaattgagctttggcgcctctgtt 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  
Sbjct: 381 ctccagagtcgttcttggttagaaaaggttggtttttaattgagctttggcgcctctggc 440

                                                                       
Query: 241 ttttgatgcatgcctaatgatcatttgccttctggtcttgctctggaatgtcgcaaccag 300
           |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 ttttgatgtatgcctaatgatcatttgccttctggtcttgctctggaatgtcacaaccag 500

                                                                       
Query: 301 cgctgtcaggaatcaaaataaccctctgggctttgtaaagccctggggttggactgttgc 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctgtcaggaatcaaaataaccctctgggctttgtaaagccctggggttggactgttgc 560

                                                                       
Query: 361 tgtctgagctttctgtgcccatttgagagatgcttcttattatttcccaacttgcaaatc 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtctgagctttccgtgcccatttgagagatgcttcttattatttcccaacttgcaaatc 620

                                                                       
Query: 421 agttccagcaaatatgtctgtcctttcccactctaccctgccatgtcacttcattgcttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agttccagcaaatatgtctgtcctttcccactctaccctgccatgtcacttcattgcttt 680

                                                        
Query: 481 tgccaatactgagctttcaatagttaaaggctatagaatagatag 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgccaatactgagctttcaatagttaaaggctatagaatagatag 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)