BAC Information

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BAC

Clone NameMSMg01-412H11
Chromosome7 (Build37)
Map Location 55,263,564 - 55,264,099
singlet/doubletsinglet
Overlap genenone
Upstream geneSpty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2, LOC638950, Mrgprc4-ps, LOC677457, EG668729, Mrgpra3, Mrgprc1-ps, LOC100040314, Mrgprc3-ps, EG435977, EG619792, Mrgprc7-ps, Mrgpra18-ps, EG435978, Mrgprc2-ps, Mrgpra4
Downstream geneMrgprx1, Mrgprb7-ps, Mrgprb12-ps, EG270335, Mrgprb5, Mrgprb4, Mrgprb13, Mrgprb8, Mrgprb1, Mrgprx2, Mrgprb2, Mrgprb9-ps, Mrgprb3, EG639116, Zdhhc13, Csrp3, E2f8, LOC100040465
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412H11.T7 (MSMg01no412_h11.b1)MSMg01-412H11.TJ (MSMg01no412_h11.g1)
ACCAG509233AG509234
length758764
length of high quality
(start - end)
542 (48 - 589)433 (79 - 511)
definitionCHROMAT_FILE: MSMg01no412_h11.b1 PHD_FILE: MSMg01no412_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:50 2005CHROMAT_FILE: MSMg01no412_h11.g1 PHD_FILE: MSMg01no412_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:50 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAGTGATATTCGCCTTTGGCATAAAGACAAGCTGGCTTAAGTT
CTTGCTATTAAAACTATGCCTTTTACCCTTGAGAAACTAGTAAGTGGTTA
TTTATTTCTCTCCCTGACCCATACAGATTTTAGAGATCTCACTTTCTAGT
TCAGATGCCAGGATACATAGAAAAATTTCAATATGCTTTGTTTTAGTGGA
AGGCAAGTGAATGTTTATTATATAGTCATCTATGTTTCAACAATTGTGAT
ACATGCAGGGTTGGCGTCCTTATAGTTGATTTCCTCAGCATATAAACATG
CAAATTTATATTTACACAATCTGAGACAAGGTAGACTATGTAGCAGGCTC
TATGTTGCCTATTTAGCATAGCCTATTATTCACTGGGACATAATGAACAA
AGCAAGATTTTATCAATCATAAGAGAAAATGATACAATTAGGAAACTTTC
TAAACAATGTATTTGGGTACTATCTGTGTGCAAACATACAAGTTCACACT
AAAATTTATATTTTTATACATTTCCTAAAATAAAAATAAAAGGCCAGTGT
AGTAAATATAAATATAATATATAATAGTAATATACTCATTTTATACTTTT
AATCCTANGATGCATAGGGCTTTCATATTAATGGAAGTAAAGTGGTCTTG
TTTTTTCAGTGTGACAAGACAACCCACTGAAGATAACCACGGGTATGATG
TCATTCTA
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATTTCTTATGGAATAAGAT
CAGACCAGTTACATTTTGTAACTCCATGAATTGGTTTTGTTTCCATGAAA
GAAAAGGAGATCTAAGGTGGTTATGATTGAATATATAGTCTCCATGTCTT
AGAACTCACAGCATCTACATCCTCTGGTACGTCAAGGCTTCTGGCTGCTG
GAGTCAGCGGGCTGGAGACATGGGATCCTTCTGCTGCAGCACAGGTCATT
GAGAGTGTGTGATGTAATATGGTGTCTGGGCCTCACACCTGTCTTTGTAA
ATTGTGTATGAGTCTTATGCTATTATTAGCATAGTGAGTGTTGTGATTAG
ACAAGTCTAAAACTTTTTTGTTGAAGGTGTTATCTCATGAGAATGTCACA
GGAAACCATGGGGCTCATTTGTCTTTAGTTTTTCTGTTTTTTTTTTTCTT
TTAAAATAATTATTTAGAGGAAAAATTTTTATTGGATGGTTTCTTTCTTT
AAATTTCACATATTTTCCCCTTTCCCGGCCTTCCCTTTTGGAACTTCCGA
AATTTATCCTCTTCCCCCCCCCCCGAATTATAAGGGTGGCCCCCGGAACT
TTGGGCCGTGCTTTTCCACATCTGGGGGCCCAAAACATTAGCCCCCAGGG
TCCCCCCCCCCTAATTCTATAACTCCTCCTCGCCCCTATCTCCCATTCAC
CCCCTTTTACCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_h11.b1 MSMg01no412_h11.b1 CHROMAT_FILE:
MSMg01no412_h11.b1 PHD_FILE: MSMg01no412_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:50 2005
         (542 letters)



>mm_chr7_55263391_55264331
          Length = 941

 Score =  441 bits (228), Expect = e-128
 Identities = 462/550 (84%), Gaps = 35/550 (6%)
 Strand = Plus / Minus

                                                                       
Query: 14  tgatattcgcctttggcataaagacaagctggctta-agttcttgctattaaaactatgc 72
           ||||||| ||||||||||||| |||||| |||| || | |||| ||||||  ||||||||
Sbjct: 709 tgatatttgcctttggcataatgacaagttggcctaca-ttctggctatt-caactatgc 652

                                                                       
Query: 73  cttttacccttgagaaactagtaagtggttatttatttctctccctgacccatacagatt 132
            ||||  |||| | |||||||||| |||||||||| |||| ||||||| | ||| |||||
Sbjct: 651 tttttggcctt-aaaaactagtaaatggttatttagttctttccctgatctatagagatt 593

                                                                       
Query: 133 ttagagatctcactttctagttcagatgccaggatacatag-aaaaatttcaatatgctt 191
            |||||||||| || ||||||||| |||| ||||||||||| ||||||||||||||||||
Sbjct: 592 ctagagatctctctctctagttcaaatgctaggatacatagcaaaaatttcaatatgctt 533

                                                                       
Query: 192 tgttttagtggaaggcaagtgaatgtttattatatagtcatctatgtttcaacaattgtg 251
           ||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 532 tgttttagtggtaggcaagtgaatgtttattatataatcatctaagtttcaacaattgtg 473

                                                                       
Query: 252 atacatgcagggttggcgtccttatagttgatttcctcagcatataaacatgc-aaattt 310
           |||||||| ||||||| ||||||| ||||||||||||||| |||||||||| | ||| | 
Sbjct: 472 atacatgctgggttggtgtccttaaagttgatttcctcaggatataaacatcctaaagt- 414

                                                                       
Query: 311 atatttacacaatctg-agacaaggtag-a--ctatgtagcaggctctatgttgcctatt 366
           ||||||| ||||| |  |||||   ||| |  || ||||||||||| |||| ||||| ||
Sbjct: 413 atatttatacaat-tatagaca---tagtatcctgtgtagcaggctatatgctgcctgtt 358

                                                                       
Query: 367 tagcatagcctattattcactgggacataatgaacaaagcaagattttatcaatcataag 426
           ||| ||||||||||| ||| |||| ||||||||||||| ||||||| ||||||| | |||
Sbjct: 357 tagtatagcctattaatcattgggccataatgaacaaaacaagattatatcaataaaaag 298

                                                                       
Query: 427 agaaaatgatacaattaggaaactttctaaacaatgtatttg-g-gtactatctgtgtgc 484
           | ||||||||||||| |||||||||||||||||||  ||||| | ||  ||||||| |  
Sbjct: 297 aaaaaatgatacaatcaggaaactttctaaacaatacatttgagtgt--tatctgtat-- 242

                                                                       
Query: 485 aaacatacaa----gttcacactaaaatttatatt-tt---tata----catttcctaaa 532
             || |||||    |||||||||||||||| | || ||   ||||    |||||||||||
Sbjct: 241 --acctacaaacacgttcacactaaaatttttgttattagatatagaagcatttcctaaa 184

                     
Query: 533 ataaaaataa 542
           |||| |||||
Sbjct: 183 ataacaataa 174


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 941
Length adjustment: 10
Effective length of query: 532
Effective length of database: 931
Effective search space:   495292
Effective search space used:   495292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)