BAC Information

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BAC

Clone NameMSMg01-412I07
Chromosome7 (Build37)
Map Location 56,259,733 - 56,259,980
singlet/doubletsinglet
Overlap genenone
Upstream geneMrgprx1, Mrgprb7-ps, Mrgprb12-ps, EG270335, Mrgprb5, Mrgprb4, Mrgprb13, Mrgprb8, Mrgprb1, Mrgprx2, Mrgprb2, Mrgprb9-ps, Mrgprb3, EG639116, Zdhhc13, Csrp3, E2f8, LOC100040465
Downstream gene9130015G15Rik, 5330421F07Rik, Dbx1, Htatip2, Prmt3, Slc6a5, Nell1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412I07.T7 (MSMg01no412_i07.b1)MSMg01-412I07.TJ (MSMg01no412_i07.g1)
ACCAG509272AG509273
length727771
length of high quality
(start - end)
249 (72 - 320)47 (85 - 131)
definitionCHROMAT_FILE: MSMg01no412_i07.b1 PHD_FILE: MSMg01no412_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:54 2005CHROMAT_FILE: MSMg01no412_i07.g1 PHD_FILE: MSMg01no412_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCCAGTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXTCAAGAGGACCG
CGGAATTCCTTTGTTTACCAAAGTTCTTAACAGAGAGCCTGGAGTTGCAC
AACAATCTCTCGCAAAGGGCCTGGCCTTGTGTGAACCCAGCTCTCCATTC
TGTGCGGTCTGGAGAGGAATCACAGTAGTCATACTTTCAACTTTGAATAA
GTGAGTCTAATTAGTATATAAGTAAGCTAAAGTTAAAGAATAAATAGCAA
GAGACAGACAGACGACAGGGAAACATCCAATCAGCTGTTCACAACATTCA
ACAGAAATTGTCTGGTGAATTTTTATTTGTGGGCTAAAGTTCACAGCTAG
GTTTTCTCCCCGCAGCTGAGTTTCCCCCTCCTCACTCCACTGCAGGCACT
TTTACATTGTGGGATACATGCGAGTAACCAGGACTATGAATGTCTTCCCT
TAGCTGTTCTCAGGGATGCAGCACTTTTGCTGTGTGATGGTCTTGTGTTT
CCCTTTCCACAGAGCTGATGTTGGAGCTGGTAATCTGTCCTCAGAGGATT
CATTCTGGAGTATACTCTATTACAATATATGTATGAATCAGAAGTAAAGT
GGTTGACAACCCTACTTCCAGACATGGCTTTCTAGTGAACTCCAGCAAAG
CATGACTTTCATTAAAACGACCCCCCCTCTTTGGTCCCCAAGGGATCCTT
GGTCCCCCTTTTATTCCTGCCCTTCTG
CAATTTCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCGGTTAGCAGTGG
CCTCACTGGAGGGGTGGGGATGAGGTAGGCGGCCAGAGATCAAACATAGA
CGTGTACCCAGAAATCTGCTCGATGCCCGATCAAACGGTTAAGTGTAGTG
CTGTTGTTCATGAATGGTTCCCGGCTCTCCCGAGCAGGTGGGACACTTAC
TTTTATACTTGTTTTTATCCAGATCTTCCACGTGGTCTTCCCCAATTAAA
ATCTTGGTAGCAATTTCCAGGCTCATTATTTTTTTCGCCCACACCAAGAA
CAGCATCACAAACTTCTGTTTCATCACCCGCAAGGACTTGTCTTTGCGGC
TGTTTACTCAATCTTTGGATAATATTCCCTTTCTCATTAACTATCCTTCT
TCCCATGTTTCTTATCCCCTCCCTTCTCCCCCCCTTTTTTTCCCCTTCCT
TCCCCATTTCCGCCTCCTTTGTTTCGTTTCGTTCCTTTTTTCTCCTATTC
CCTTCCCCTTCTCCTGTCCTCCCTTCTCCCTCCCCTCCCCCTCCTTTCCT
TCCTCTTTTTTCTCTTTCCCACTCCCCTCCTTTTTTACGCATCCCCTACC
CTTCCTTATTCCCCCTCTCTTTTCCTCTCCTTTTTTCCCCTCCCTCCTCT
CTCTTAATTACCTCTTTCCTCATATTCCCTACTATTCTTCCACTTCCTTG
TCCTCCCCTTTTTCCTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_i07.b1 MSMg01no412_i07.b1 CHROMAT_FILE:
MSMg01no412_i07.b1 PHD_FILE: MSMg01no412_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:54 2005
         (249 letters)



>mm_chr7_56259533_56260181
          Length = 649

 Score =  472 bits (244), Expect = e-138
 Identities = 247/248 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttcttaacagagagcctggagttgcacaacaatctctcgcaaagggcctggccttgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agttcttaacagagagcctggagttgcacaacaatctctcgcaaagggcctggccttgtg 389

                                                                       
Query: 61  tgaacccagctctccattctgtgcggtctggagaggaatcacagtagtcatactttcaac 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 388 tgaacccagctctccattctgtgcggtctggagaggaatcacaggagtcatactttcaac 329

                                                                       
Query: 121 tttgaataagtgagtctaattagtatataagtaagctaaagttaaagaataaatagcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tttgaataagtgagtctaattagtatataagtaagctaaagttaaagaataaatagcaag 269

                                                                       
Query: 181 agacagacagacgacagggaaacatccaatcagctgttcacaacattcaacagaaattgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agacagacagacgacagggaaacatccaatcagctgttcacaacattcaacagaaattgt 209

                   
Query: 241 ctggtgaa 248
           ||||||||
Sbjct: 208 ctggtgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)