BAC Information

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BAC

Clone NameMSMg01-413I06
Chromosome7 (Build37)
Map Location 109,309,159 - 109,309,562
singlet/doubletsinglet
Overlap geneNup98
Upstream geneFchsd2, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10
Downstream geneFrag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413I06.T7 (MSMg01no413_i06.b1)MSMg01-413I06.TJ (MSMg01no413_i06.g1)
ACCAG510032AG510033
length731747
length of high quality
(start - end)		430 (39 - 468)399 (69 - 467)
definitionCHROMAT_FILE: MSMg01no413_i06.b1 PHD_FILE: MSMg01no413_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:13 2005CHROMAT_FILE: MSMg01no413_i06.g1 PHD_FILE: MSMg01no413_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
CTGTGTATAACTTTTTGCACTATGAGCATCAAGCCCCTGAATTTATTTAT
TATTATTGTTATTCTTATTGTTATCGTCATCCCTGAAACAGGGTTTTTCT
GTGTATCCCCGGCTGTCCTAGAACTCATTTTATAGACCAGGTTGACTTCA
AACTCAGAGATCCACTGCCTTTGCCTCCCAAGCGCTGGGATTAAAGTTTT
GAGTCACCACTGCCTGCCTGGTGAGTGAGCCCTTGGATTTATTTTGGAAA
AAAAAAGGAGACTCCTTGTTTTATACATTTATTTTTCTGTGCATTGGTGT
TTTGCCTGCATGTATGTCTGTGTGAGGATGAAGATGAAGATTCCCCTGGA
ACTGGAGTTACAGACAGTTAGGAGCTGTCATGTGGTTGCTGGGAATTGAA
CCCTGGTCCTCTAGAAGAGTAGCCAGCGCTTTTAACCACTGAGCCATCAC
TCCCCCTGGGACTATTAAGGATAGCGACTTGGGACTGCTAATAGGACTTC
TGAAGGAGACCACCCCACAACATTTCATAGTGGAAACCCTATTAAGAGAT
CCACTGTACTCTGTCACCTGTTCTTTGTCTGTCTTTCACATGATAACGCT
GTTTTTCTATTTCCCCTCATTGATTTCCTAAACCCCCGGTTTGGTAGACT
TTTATTAATGGTTTCATGCCCGTTTCTCTCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCCAAAGGGTGGTGGGAATGGTAAGATGTGAG
TCACTGGCCCTGGTTTGGTTTTCTGATTATTAAAATTAGTACCATACATT
TGAAATAAACAGGAATATTCCTTGATACTTTTTCTTTTAATACAGTGAAA
TAATGCCTTGCTAAATAGACATGGCAGGTCTGGGTCTTTCTGTATAAACA
GGTTGGCAATGAAAGGGTGATATTCCTCTTGCCTTAGTCTACTAGCTGCT
GGGGTTACAAATGTAATTCTTTTTATTAAGCTTGCTCTGCTTTTCTTTTC
TTTTCTTTTCTTTTCTTTTCTTTTCTTTTTCAGAGACTGAAACCAACCAA
TCCAGCTGCTCAGAAAGCTCTTACAACACCTACTCATTATAAACTTACAC
CTCGCCCTGCTACCAGAGTCAGGCCAAAGGCTTTGCAAACTACAGGCACA
GCCCAATCATATTCTCTTTGACGGGCTGGATGACGATGAACCCTCTCTAT
CCAATGGAGCATCCCTGCCTAACCTGATTTTTGTTTTGTCATACACATTG
TATGCTTTTCTAACCAATATTTCCACTACTCTCTGGCTTACAATTTTTCT
TAAATTTTTTGCTGACCGCGCCTTTCTTTTTCTATGCTCCTTTACCTCTT
TTCTTTTCCTCATCTTACTTTCTTTCGTAATATCTTAATTACTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_i06.g1 MSMg01no413_i06.g1 CHROMAT_FILE:
MSMg01no413_i06.g1 PHD_FILE: MSMg01no413_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:13 2005
         (399 letters)



>mm_chr7_109309115_109309913
          Length = 799

 Score =  712 bits (368), Expect = 0.0
 Identities = 393/408 (96%), Gaps = 13/408 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccaaagggtggtgggaatggtaagatgtgagtcactggccctggtttggttttctgatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tccaaagggtggtgggaatggtaagatgtgagtcactggccctggtttggttttctgatt 389

                                                                       
Query: 61  attaaaattagtaccatacatttgaaataaacaggaatattccttgatactttttctttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 attaaaattagtaccatacatttgaaataaacaggaatattccttgatactttttctttt 329

                                                                       
Query: 121 aatacagtgaaataatgccttgctaaatagacatggcaggtctgggtctttctgtataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aatacagtgaaataatgccttgctaaatagacatggcaggtctgggtctttctgtataaa 269

                                                                       
Query: 181 caggttggcaatgaaagggtgatattcctcttgccttagtctactagctgctggggttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 caggttggcaatgaaagggtgatattcctcttgccttagtctactagctgctggggttac 209

                                                                       
Query: 241 aaatgtaattc----tttttattaagcttgctctg-----cttttcttttcttttctttt 291
           ||||||||  |        ||||||||||||||||     ||||||||||||||||||||
Sbjct: 208 aaatgtaagccacca----tattaagcttgctctgcttttcttttcttttcttttctttt 153

                                                                       
Query: 292 cttttcttttcttttctttttcagagactgaaaccaaccaatccagctgctcagaaagct 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 cttttcttttcttttctttttcagagactgaaaccaaccaatccagctgctcagaaagct 93

                                                           
Query: 352 cttacaacacctactcattataaacttacacctcgccctgctaccaga 399
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  cttacaacacctactcattataaacttacacctcgccctgctaccaga 45


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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