BAC Information

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BAC

Clone NameMSMg01-415I20
Chromosome7 (Build37)
Map Location 147,349,770 - 147,552,100
singlet/doubletdoublet
Overlap geneOlfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60
Upstream geneStk32c, LOC100038956, Lrrc27, Pwwp2, Inpp5a, Nkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253, EG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522
Downstream geneGA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415I20.T7 (MSMg01no415_i20.b1)MSMg01-415I20.TJ (MSMg01no415_i20.g1)
ACCAG511584AG511585
length758742
length of high quality
(start - end)		385 (36 - 420)489 (65 - 553)
definitionCHROMAT_FILE: MSMg01no415_i20.b1 PHD_FILE: MSMg01no415_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:58 2005CHROMAT_FILE: MSMg01no415_i20.g1 PHD_FILE: MSMg01no415_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,349,770 - 147,350,149)(147,551,801 - 147,552,100)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCATTT
CCCACCCCGTGTTTCCCAAGGAGCAAACTTACTGTTGGAGATTGAGTGGA
AAGTGTTGTCACCAATTCTCAAGTGAAATATGCAGTTTGGGAATTTCCCG
TAGAGACATCTCTGTCACTAGGTGTCTGAGGGCAGACGGGAAGATCTGGA
ACAGAGCAGTAGACTTCATGGATTCCTTGGCCCATTATGGAAGGGGAGCA
GCCCCAGTCCCTTGATCACATCTAGCACCAGGCTCTCTGTTCCTGGACAG
GACATGGTGATTGCTGGATGAGTGTAGTTTTCACAAACTGAGCAGCTCTC
ACCACAGTTGGTTCTTATTTACTGGGTTGGGCAGTTGGTTCTTCTGGTAT
GGTGAATTCACTAACAGCAGGTAATGGCCCCTCGTGGGTTCACCGGAGTC
TGTGGTCTTGCTGGTCTAATCTCCATTGCTCAGGTCCCTTGGTAACCCCA
GCTGGTGTGTTGAGTTGATTCCCTTAGTATCCTGACGCCTGTTCTCATGT
CCCGCGTATGTTTTTCCCCCCCTCTTGTTTGCTTCCCCCCCGCCCATTCG
GCCCTGGAAATTTTTTTTCTCTGTACTCTCTCCTTCCTTGTTTTTCCTCC
TTTTCCCTCCTTTCCCCCTCGTCCTTACCCCTTTCTTTGTCCTTCATCTT
TCTTTCCGCCCCCTTATTCTTTCTTTCTCTCCCTTTCCCCCTTTTTCCCT
CCCTTCCC

TGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATTTCCTGGTCCATATAAACAGCTCATTTGTCAGTA
TTACCTGACCTAATTCATGTTGCACATCTCCTACACTGGCCCAATCTAAA
GAAGGCCAAATTATCACATCAGACACACATACAAAGATAAGAGAAGTCCA
CATGCCCAGGACAAATCAGAGGAAAAAAACAAATATGAATGAATAACCAA
GACAGCATGTCTATGACAAAGCCCACTAATTCCTAGAGAAATATTCCCTA
ACAAGAACTGCCTATATGAACCCCGAGATACAGAATTTAAAAGAACAATC
ATAAACTTGACTGTAGACCTCAAGGCCATTAAAGAAGACATGAAGAAAAT
AGAAGAAAAAAGACCTCATTGTACTCCAGAGGACAACAACAAGTGCTTGA
GTAATGTACAAAAAAATCAAAACATTCCGGGTGTGGTGGTGCACGCCTTT
ACACCCAGCACTTGGGAGGCAGAGGCTGGTGGATTTCTGAGTTCCAGGTC
AGCCTGGCCTACAAAGTGAGTTCCAGGACAGTCAGGGCTATACAGAGAAA
CCCTGTCTCGAAAAAAAATTAAAACCTATGGTTAAGTGAACTGATAAAGA
AATCCCGGAACATACATGGGGTTTCCCACCAATATAACACCATGGATCGG
GCTCACTCCTATACGAGATATGGATTATACAGTTTCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_i20.b1 MSMg01no415_i20.b1 CHROMAT_FILE:
MSMg01no415_i20.b1 PHD_FILE: MSMg01no415_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:58 2005
         (385 letters)



>mm_chr7_147349565_147350349
          Length = 785

 Score =  712 bits (368), Expect = 0.0
 Identities = 377/380 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcatttcccaccccgtgtttcccaaggagcaaacttactgttggagattgagtgga 65
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcatttcccaccctgtgtttcccaaggagcaaacttactgttggagattgagtgga 265

                                                                       
Query: 66  aagtgttgtcaccaattctcaagtgaaatatgcagtttgggaatttcccgtagagacatc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aagtgttgtcaccaattctcaagtgaaatatgcagtttgggaatttcccgtagagacatc 325

                                                                       
Query: 126 tctgtcactaggtgtctgagggcagacgggaagatctggaacagagcagtagacttcatg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tctgtcactaggtgtctgagggcagacgggaagatctggaacagagcagtagacttcatg 385

                                                                       
Query: 186 gattccttggcccattatggaaggggagcagccccagtcccttgatcacatctagcacca 245
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gtttccttggcccattatggaaggggagcagccccagtcccttgatcacatctagcacca 445

                                                                       
Query: 246 ggctctctgttcctggacaggacatggtgattgctggatgagtgtagttttcacaaactg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggctctctgttcctggacaggacatggtgattgctggatgagtgtagttttcacaaactg 505

                                                                       
Query: 306 agcagctctcaccacagttggttcttatttactgggttgggcagttggttcttctggtat 365
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 506 agcagctctcaccacagttggttcttatttcctgggttgggcagttggttcttctggtat 565

                               
Query: 366 ggtgaattcactaacagcag 385
           ||||||||||||||||||||
Sbjct: 566 ggtgaattcactaacagcag 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no415_i20.g1 MSMg01no415_i20.g1 CHROMAT_FILE:
MSMg01no415_i20.g1 PHD_FILE: MSMg01no415_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:58 2005
         (489 letters)



>mm_chr7_147551801_147552689
          Length = 889

 Score =  557 bits (288), Expect = e-163
 Identities = 297/300 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttcctggtccatataaacagctcatttgtcagtattacctgacctaattcatgttgca 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 300 atttcctggtccatataaacagctcatttgtcagtgttacctgacctaattcatgttgca 241

                                                                       
Query: 61  catctcctacactggcccaatctaaagaaggccaaattatcacatcagacacacatacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 catctcctacactggcccaatctaaagaaggccaaattatcacatcagacacacatacaa 181

                                                                       
Query: 121 agataagagaagtccacatgcccaggacaaatcagaggaaaaaaacaaatatgaatgaat 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 180 agataagagaagtccacatgcccaggacaaatcagaggaaaaaaccaaatatgaatgaat 121

                                                                       
Query: 181 aaccaagacagcatgtctatgacaaagcccactaattcctagagaaatattccctaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 aaccaagacagcatgtctatgacaaagcccactaattcctagagaaatattccctaacaa 61

                                                                       
Query: 241 gaactgcctatatgaaccccgagatacagaatttaaaagaacaatcataaacttgactgt 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  gaactgcctaaatgaaccccgagatacagaatttaaaagaacaatcataaacttgactgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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