BAC Information

Click to search

BAC

Clone NameMSMg01-415J21
Chromosome7 (Build37)
Map Location 97,838,274 - 98,021,597
singlet/doubletdoublet
Overlap geneLOC666689, LOC621816, LOC100039943
Upstream geneMe3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik
Downstream geneDlg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415J21.T7 (MSMg01no415_j21.b1)MSMg01-415J21.TJ (MSMg01no415_j21.g1)
ACCAG511633AG511634
length741746
length of high quality
(start - end)		515 (39 - 553)487 (67 - 553)
definitionCHROMAT_FILE: MSMg01no415_j21.b1 PHD_FILE: MSMg01no415_j21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:03 2005CHROMAT_FILE: MSMg01no415_j21.g1 PHD_FILE: MSMg01no415_j21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,021,121 - 98,021,597)(97,838,274 - 97,838,760)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCTA
TAAAATTACCTTTTGAATCCAGTGAAGTATTGTGATTTATATCCTCTGTA
TTAATTTTTTTCTACATTTATTAGTTTTTAGGTATTGAAGCATTCTTGAA
TTCATGGTATGAGAACAACTTGATAATAGAATATTATTTTTTAAATGTGC
TGTTGAACTTTGTTCAGAAGAGTTTTACAGAAAAGTTTGACGTCTACAGT
CATCAAGGAGATTGATCCAGTTTTCTAGGTCCTTTTATTCTCACTAGAGT
TGATGTATCTCATTCATGTATATTGTCATGAATAGTATTTTTATAGGATA
ACTTTGGAAGCATCTATTTTTTTAATTTTAAGTGAATGAGAACAGAGCTA
GTAGTCCATTGATGTTATATGTGTATATTAGATGTTATCAATGGTACTTA
TTTTAAATGCAAAGATTATAAAATACAGAAATAGCCCAATAAATAATGTA
AAAAAACATATCCAAATACATAATACCTCTGAGNTTAAAAACATTTTGAG
AGTTGGTGAACCAAATTTCATAAAACAAATACTACTGGATATTAACCAAC
CAATAAAATTTAACCAAATAATACCGCATTTGCATACACTATTATTACTG
ATAATTACACCCAACCATACTTTACAAAGTAACTTTTAGGGAGATAGGTC
CTTCCTAAGCAAATAGATATATCCCAATTTCCAAAGACTGT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGGGGGAACTAGAAGGTAATAAGGGGGATTAAAA
ATATTATTTATTATGTGCATTTTTGAAATTCCCAAAGAATAAATTTAAAA
GAAAATTACAGGAGAATATTGGAATATAAGAAATATTGAGGTCCTTTCAC
TTGACTGAAAACTGGTACAATTAATGCTACATGTTTTCAGTAACTATACA
CATATAGCATTTTAAAAAAATTATTTATAGTAAAGCTTAACATTAGTGAA
AATGGCCAGGTAGCTTTCCTTTCAGAGGTGATTTAAGATCTTACACTTGT
TCAACTATGGCTTTGGTATAAGGTCATCACCTGGGGCATCTATACCAGTG
ATCCAAACAGATGAAAATATAGCATGCATTACTACAAAAGATGCATTTAT
TGGCAAGATCAGGAATATGCCACTTAGCTCCATGATAAAGCCTATGACTC
AACTATATGACCATATTTAACTGCAAAAGAGCAGCTGTGTGTGGCATATT
TACAACTCTGTATTAGNTACTTTTCCTGTTTCTGCGATTAAAAATACCCC
CATGGAAGCCACTTACGAGAGTAAAGGTTTATTTTGTCTCTTACCTGAAG
GGACAGTGGGTATTATGGTCCGGAGCCTGCTCCATCTGGACTTGGTAAAC
TTGATTATTTGGCTCCCCCATCCCCAAGAGATGGGTTGACCCCGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_j21.b1 MSMg01no415_j21.b1 CHROMAT_FILE:
MSMg01no415_j21.b1 PHD_FILE: MSMg01no415_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:03 2005
         (515 letters)



>mm_chr7_98020683_98021597
          Length = 915

 Score =  893 bits (462), Expect = 0.0
 Identities = 473/477 (99%)
 Strand = Plus / Minus

                                                                       
Query: 39  gtattgtgatttatatcctctgtattaatttttttctacatttattagtttttaggtatt 98
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 gtattgtaatttatatcctctgtattaatttttttctacatttattagtttttaggtatt 856

                                                                       
Query: 99  gaagcattcttgaattcatggtatgagaacaacttgataatagaatattattttttaaat 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 gaagcattcttgaattcatggtatgagaacaacttgataatagaatattattttttaaat 796

                                                                       
Query: 159 gtgctgttgaactttgttcagaagagttttacagaaaagtttgacgtctacagtcatcaa 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 gtgctgttgaactttgttcagaagagttttacagaaaagtttgacgtctacagtcatcaa 736

                                                                       
Query: 219 ggagattgatccagttttctaggtccttttattctcactagagttgatgtatctcattca 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ggagattgatccagttttctaggtccttttattctcactagagttgatgtatctcattca 676

                                                                       
Query: 279 tgtatattgtcatgaatagtatttttataggataactttggaagcatctatttttttaat 338
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ggtatattgtcatgaatagtatttttataggataactttggaagcatctatttttttaat 616

                                                                       
Query: 339 tttaagtgaatgagaacagagctagtagtccattgatgttatatgtgtatattagatgtt 398
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tttaagtgaatgagagcagagctagtagtccattgatgttatatgtgtatattagatgtt 556

                                                                       
Query: 399 atcaatggtacttattttaaatgcaaagattataaaatacagaaatagcccaataaataa 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 atcaatggtacttattttaaatgcaaagattataaaatacagaaatagcccaataaataa 496

                                                                    
Query: 459 tgtaaaaaaacatatccaaatacataatacctctgagnttaaaaacattttgagagt 515
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 495 tgtaaaaaaacatatccaaatacataatacctctgagtttaaaaacattttgagagt 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no415_j21.g1 MSMg01no415_j21.g1 CHROMAT_FILE:
MSMg01no415_j21.g1 PHD_FILE: MSMg01no415_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:03 2005
         (487 letters)



>mm_chr7_97838074_97838960
          Length = 887

 Score =  926 bits (479), Expect = 0.0
 Identities = 485/487 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggggaactagaaggtaataagggggattaaaaatattatttattatgtgcatttttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggggaactagaaggtaataagggggattaaaaatattatttattatgtgcatttttga 260

                                                                       
Query: 61  aattcccaaagaataaatttaaaagaaaattacaggagaatattggaatataagaaatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattcccaaagaataaatttaaaagaaaattacaggagaatattggaatataagaaatat 320

                                                                       
Query: 121 tgaggtcctttcacttgactgaaaactggtacaattaatgctacatgttttcagtaacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaggtcctttcacttgactgaaaactggtacaattaatgctacatgttttcagtaacta 380

                                                                       
Query: 181 tacacatatagcattttaaaaaaattatttatagtaaagcttaacattagtgaaaatggc 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacacatatagcatttttaaaaaattatttatagtaaagcttaacattagtgaaaatggc 440

                                                                       
Query: 241 caggtagctttcctttcagaggtgatttaagatcttacacttgttcaactatggctttgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggtagctttcctttcagaggtgatttaagatcttacacttgttcaactatggctttgg 500

                                                                       
Query: 301 tataaggtcatcacctggggcatctataccagtgatccaaacagatgaaaatatagcatg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 tataaggtcatcacctggggcatctataccagtgatccaaacagatgaaaatgtagcatg 560

                                                                       
Query: 361 cattactacaaaagatgcatttattggcaagatcaggaatatgccacttagctccatgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattactacaaaagatgcatttattggcaagatcaggaatatgccacttagctccatgat 620

                                                                       
Query: 421 aaagcctatgactcaactatatgaccatatttaactgcaaaagagcagctgtgtgtggca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagcctatgactcaactatatgaccatatttaactgcaaaagagcagctgtgtgtggca 680

                  
Query: 481 tatttac 487
           |||||||
Sbjct: 681 tatttac 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |