BAC Information

Click to search

BAC

Clone NameMSMg01-415P02
Chromosome7 (Build37)
Map Location 117,078,887 - 117,079,305
singlet/doubletsinglet
Overlap geneRab6ip1
Upstream geneEif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5
Downstream geneTmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, Sbf2, LOC668246, Adm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415P02.T7 (MSMg01no415_p02.b1)MSMg01-415P02.TJ (MSMg01no415_p02.g1)
ACCAG511879AG511880
length728721
length of high quality
(start - end)
457 (65 - 521)525 (69 - 593)
definitionCHROMAT_FILE: MSMg01no415_p02.b1 PHD_FILE: MSMg01no415_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:27 2005CHROMAT_FILE: MSMg01no415_p02.g1 PHD_FILE: MSMg01no415_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGGTTATGCCACGGCTACACAGTCTCAATAAAAAAATAAATGTTATGTA
TTGGGGTTGTATCTTAAGATTGCTATTGTAATGAAACACCACGACCAAAA
GCACACTGGGGAAGAAGGGTTTATTTGGCTTACACTTCCATATCATTGTT
CATCACCAAAGGAAGTTAGGACAGGGACTCAAACCTGGAGGTAGGAGCTG
ATACAAAGGCCATAGAGAATTGCTGTTTACTGGCTTGCTCAGCCTGCTTC
TTAGAGAGTCCAGGATGATCACCCACAATGTGCTGGGTCCTCTCCCATCA
ATCACAAATTAAGAAAATGCCTTAGAGCCGAATCTTACAGAGGGATTTTC
TCAACTGAGATTCTCTTCTTTGCAGCGGATTCTAGATTGTGCTAAGTTGA
CATCCAAACTATCTAGCATGAGCTCGTGAGATGGCTCAGCAATTAGAGCT
CTTGTTGCTCTTGCAGAAGACCCAAGTTCAGCTCCCAGCACCCACAAGAG
GGAAGAGCGCTGCCTTTGCAGCAGGTGTAGCTACCCTACTCATAGCTCGG
GAAGTTTCTTGGACGCATAACCTGTCTCTTCTGGTCCAGGTATAACACGC
TTACCTTTACTACTGAACCTAGAACGTACTTGTTTTCTCTTAGAAGCTTC
GAACACCTCGCTTGCTCTTCCCCCCTTT
ATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTTAGCTGGCACGCACAGACGTGCCCCTGTG
CATTGTGCCACCTCAGTCGCCTGAGCTCTGAGAGAATGAATAGTGGCCAT
CACACTCAGCTTTGTAGTCAGCCTATTTTGGAATAGAAAATATGAATGAA
TATTATGTAAAGTAAGGGTAAGTATTATTTCGTGAGATTTTTGTTTAGGT
TATATATTCACATATATGTATATATATACACATACACTTACTGTACATAT
ATGTGTGTTTATTACTTTGTGACATAAAATGTGTTTTGTGCTGGAATCAT
GGTCAAAAAGTTTGAATAACACTGCTTTATTGTAATACTCTGTTATTTTA
TTTATCATATAGCATTATGCCAGTACATTCAGGCTTCTAAAGCCAGGGAT
GGTGCCAGCCCTTTCATTTCAAGTACGACTGAAGGTAAAACCCAAACCAA
ACAGCGCACCCAGAGCTTTCTGGTTCTCAGTCTCTCAGTGGCCTTTTAAC
CGTCTTGTGTCTTTTTGAACAGTGGATTCCTTAGGTTTGTGTCTCTCTAG
ATGGCAGTTTTTTTGATCCCCTCCCCCTCCCTTTAATATCATTACTAACA
CATATGCTAGCGTTTTTATGAGGAGGGAGGACAAACACAGAGTTCAAGAA
TTCTCCATGTATCTGAACTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_p02.g1 MSMg01no415_p02.g1 CHROMAT_FILE:
MSMg01no415_p02.g1 PHD_FILE: MSMg01no415_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:27 2005
         (525 letters)



>mm_chr7_117078381_117079305
          Length = 925

 Score =  787 bits (407), Expect = 0.0
 Identities = 417/421 (99%), Gaps = 2/421 (0%)
 Strand = Plus / Minus

                                                                       
Query: 105 ctattttggaatagaaaatatgaatgaatattatgtaaagtaagggtaagtattatttcg 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 ctattttggaatagaaaatatgaatgaatattatgtaaagtaagggtaagtattatttcg 866

                                                                       
Query: 165 tgagatttttgtttaggttatatattcacatatatgtatatatatacacatacacttact 224
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 865 tgagatttttgtttaggttatatattcacatatatgtatatatat--acatacacttact 808

                                                                       
Query: 225 gtacatatatgtgtgtttattactttgtgacataaaatgtgttttgtgctggaatcatgg 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gtacatatatgtgtgtttattactttgtgacataaaatgtgttttgtgctggaatcatgg 748

                                                                       
Query: 285 tcaaaaagtttgaataacactgctttattgtaatactctgttattttatttatcatatag 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tcaaaaagtttgaataacactgctttattgtaatactctgttattttatttatcatatag 688

                                                                       
Query: 345 cattatgccagtacattcaggcttctaaagccagggatggtgccagccctttcatttcaa 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 cattatgccagtacattcaggcttctaaagccagggatggtgccagccctttcatttcaa 628

                                                                       
Query: 405 gtacgactgaaggtaaaacccaaaccaaacagcgcacccagagctttctggttctcagtc 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gtacgactgaaggtaaaacccaaaccaaacagcgcacccagagctttctggttctcagtc 568

                                                                       
Query: 465 tctcagtggccttttaaccgtcttgtgtctttttgaacagtggattccttaggtttgtgt 524
           |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 567 tctcagtggccttttaaccgtcttgtgtctttttgagcagtagattccttaggtttgtgt 508

            
Query: 525 c 525
           |
Sbjct: 507 c 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)