BAC Information

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BAC

Clone NameMSMg01-416A17
Chromosome7 (Build37)
Map Location 79,355,521 - 79,516,806
singlet/doubletdoublet
Overlap geneMctp2
Upstream geneLOC665535, LOC100042873
Downstream geneLOC100042880, LOC233391, LOC665570, LOC100042029, EG384643, LOC625243, 4930429H19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416A17.T7 (MSMg01no416_a17.b1)MSMg01-416A17.TJ (MSMg01no416_a17.g1)
ACCAG511956AG511957
length704699
length of high quality
(start - end)		645 (35 - 679)561 (113 - 673)
definitionCHROMAT_FILE: MSMg01no416_a17.b1 PHD_FILE: MSMg01no416_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:35 2005CHROMAT_FILE: MSMg01no416_a17.g1 PHD_FILE: MSMg01no416_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,355,521 - 79,356,161)(79,516,246 - 79,516,806)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAATTCACCGT
TTCTCAGTCCAAGGACAGCTTGCTCTCCCTAGCTTGAGGGGCTCTACTGT
CGGAAATCAGAGGTGAGGTGAACTTCTGCCAGCACATTTCCGTTGTGCTT
ATTACAAGGCAGGCATGGTCTTGTGGTTTTATTGTATTCCTTGCTACAAT
CCTGGAAGAAACTATAATTCTGATGCTATAATCTGTTCCCCATGGGTGAC
CACCTCAATGGAGCTGTTAAGAGTCCAAAGTAAACAAATCAACAGCAGAA
TAGCTCTGGCTGCTTCCCATTCTATGATAGTTTGTCACAAAATCCAGCAA
GGACACTGAAAATTTTCTATCATGGAGGACAACTCACCTTCTTCTTTTAT
TGCTTTGTAAAACTAATGTGAAATCATGGATGTGTTTACAAATACACCCC
AGTGGTCTGAGTCAGCACATTAACTTTCTAGGGAGATTTCCAGACTCAGA
AACTAGGGTGAGCCCTTTGAATGAATAGGGTCTATAGGTGGATTAGACCA
ACCTTGGATTAAATGTTTATTTTANAGAATATGCCCATAGTAACCACATG
AAGACATTTAGGGATCTAACAACCACTTGCATAGCTTTTACATTATATTA
TGTCTTATTTGTAATACAGAGATGAATCATGTAAGATGTGCAAGTGTTTG
CAGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACGAGG
ACCTCTTGTTAGAAGCTCACCAAGACTGAACGTATGGTTTTGTCTAATTT
ATCCCGACACCTGACCTGGGCAAAGTAATGAGATTTATCAGCTCAAAAGA
CAGAGTTGGGGGCTGAGACTACTGTGGAGAATTAGCAGTGAGGCTGAGAG
AGAATCCATCACATCGTAAATTAATCTTGGTGATTCAATTCAGCTCAAAA
TGCATAAGCTTTGAAAAGCCAGACGGAAGCCCTGGTCTATGAAGTCTGCA
GGCTGTGCTAACATCTACAGCTTCCACCAACGAATGTGGCCACAGAGATG
TGGGATTCACTCATCTAATTGGCACAATGGTAACTTAATACAAGCCCCCA
AATGTGACAGTGACCCATATTTCACGGCATCATGTATTCTGTGAACAGAT
GTGAACATTGTGCCTATCTGTAACCCATAGGCAGGAAACAGATAGATTAT
CCTTTTGGAGCATTTATTTTCTCATATAATTGGACTGTGCTAGGCTTGTG
TAGCAAATTCAGTCAATAAGAATGCATTGGCAGCTCGTTATTGCTTGACA
GACCCCACCGTANAGATTACAGTTCAATCTTGCCTGCCCCCTCCATCTCT
CCACTCCATCTTGTCCACTTCATCTGAAATGATATGTTGTAAGTGGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_a17.b1 MSMg01no416_a17.b1 CHROMAT_FILE:
MSMg01no416_a17.b1 PHD_FILE: MSMg01no416_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:35 2005
         (645 letters)



>mm_chr7_79355317_79356361
          Length = 1045

 Score = 1203 bits (622), Expect = 0.0
 Identities = 636/641 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcaccgtttctcagtccaaggacagcttgctctccctagcttgaggggctctact 64
           |||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcaccgtttttaagtccaagaacagcttgctctccctagcttgaggggctctact 264

                                                                       
Query: 65  gtcggaaatcagaggtgaggtgaacttctgccagcacatttccgttgtgcttattacaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcggaaatcagaggtgaggtgaacttctgccagcacatttccgttgtgcttattacaag 324

                                                                       
Query: 125 gcaggcatggtcttgtggttttattgtattccttgctacaatcctggaagaaactataat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcaggcatggtcttgtggttttattgtattccttgctacaatcctggaagaaactataat 384

                                                                       
Query: 185 tctgatgctataatctgttccccatgggtgaccacctcaatggagctgttaagagtccaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctgatgctataatctgttccccatgggtgaccacctcaatggagctgttaagagtccaa 444

                                                                       
Query: 245 agtaaacaaatcaacagcagaatagctctggctgcttcccattctatgatagtttgtcac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtaaacaaatcaacagcagaatagctctggctgcttcccattctatgatagtttgtcac 504

                                                                       
Query: 305 aaaatccagcaaggacactgaaaattttctatcatggaggacaactcaccttcttctttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaatccagcaaggacactgaaaattttctatcatggaggacaactcaccttcttctttt 564

                                                                       
Query: 365 attgctttgtaaaactaatgtgaaatcatggatgtgtttacaaatacaccccagtggtct 424
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 565 attgctttgtaaaactaatgtgaaatcatgaatgtgtttacaaatacaccccagtggtct 624

                                                                       
Query: 425 gagtcagcacattaactttctagggagatttccagactcagaaactagggtgagcccttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gagtcagcacattaactttctagggagatttccagactcagaaactagggtgagcccttt 684

                                                                       
Query: 485 gaatgaatagggtctataggtggattagaccaaccttggattaaatgtttattttanaga 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 685 gaatgaatagggtctataggtggattagaccaaccttggattaaatgtttattttaaaga 744

                                                                       
Query: 545 atatgcccatagtaaccacatgaagacatttagggatctaacaaccacttgcatagcttt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atatgcccatagtaaccacatgaagacatttagggatctaacaaccacttgcatagcttt 804

                                                    
Query: 605 tacattatattatgtcttatttgtaatacagagatgaatca 645
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tacattatattatgtcttatttgtaatacagagatgaatca 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no416_a17.g1 MSMg01no416_a17.g1 CHROMAT_FILE:
MSMg01no416_a17.g1 PHD_FILE: MSMg01no416_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:35 2005
         (561 letters)



>mm_chr7_79516046_79517006
          Length = 961

 Score = 1040 bits (538), Expect = 0.0
 Identities = 555/561 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacctgggcaaagtaatgagatttatcagctcaaaagacagagttgggggctgagactac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 761 gacctgggcaaagtaatgagatttatcagctcaaaagacagagttgggggctgagactgc 702

                                                                       
Query: 61  tgtggagaattagcagtgaggctgagagagaatccatcacatcgtaaattaatcttggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tgtggagaattagcagtgaggctgagagagaatccatcacatcgtaaattaatcttggtg 642

                                                                       
Query: 121 attcaattcagctcaaaatgcataagctttgaaaagccagacggaagccctggtctatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 attcaattcagctcaaaatgcataagctttgaaaagccagacggaagccctggtctatga 582

                                                                       
Query: 181 agtctgcaggctgtgctaacatctacagcttccaccaacgaatgtggccacagagatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 agtctgcaggctgtgctaacatctacagcttccaccaacgaatgtggccacagagatgtg 522

                                                                       
Query: 241 ggattcactcatctaattggcacaatggtaacttaatacaagcccccaaatgtgacagtg 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 521 ggattcactcatctaattggcacaatggtaacttaatacaagcccccaaatgtgacagcg 462

                                                                       
Query: 301 acccatatttcacggcatcatgtattctgtgaacagatgtgaacattgtgcctatctgta 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 461 acccatatttcacggcatcatgtattctgtgaacagatgcgaacattgtgcctttctgta 402

                                                                       
Query: 361 acccataggcaggaaacagatagattatccttttggagcatttattttctcatataattg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 acccataggcaggaaacagatagattatccttttggagcatttattttctcatataattg 342

                                                                       
Query: 421 gactgtgctaggcttgtgtagcaaattcagtcaataagaatgcattggcagctcgttatt 480
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gactgtgcttggcttgtgtagcaaattcagtcaataagaatgcattggcagctcgttatt 282

                                                                       
Query: 481 gcttgacagaccccaccgtanagattacagttcaatcttgcctgccccctccatctctcc 540
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gcttgacagaccccaccgtaaagattacagttcaatcttgcctgccccctccatctctcc 222

                                
Query: 541 actccatcttgtccacttcat 561
           |||||||||||||||||||||
Sbjct: 221 actccatcttgtccacttcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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