BAC Information

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BAC

Clone NameMSMg01-416C15
Chromosome7 (Build37)
Map Location 36,536,750 - 36,536,993
singlet/doubletsinglet
Overlap geneDpy19l3
Upstream geneChst8, Pepd, Cebpg, Cebpa, Slc7a10, Wdr88, Gpatch1, Rhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5
Downstream genezfp507, LOC100043872, EG668988, LOC668507, Tshz3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416C15.T7 (MSMg01no416_c15.b1)MSMg01-416C15.TJ (MSMg01no416_c15.g1)
ACCAG512047AG512048
length692717
length of high quality
(start - end)
244 (48 - 291)229 (313 - 541)
definitionCHROMAT_FILE: MSMg01no416_c15.b1 PHD_FILE: MSMg01no416_c15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:44 2005CHROMAT_FILE: MSMg01no416_c15.g1 PHD_FILE: MSMg01no416_c15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCACTATTTCAGAGATGCGCGGAATTCTTAGCTTTACAGCTAGTAGG
TAGCAGAGAAAGCTGTTTAATAAGATAAAAGGTCTCTCAGTTGGAAAGCT
GGACCATTTGGCCAAGCTGATGAAAGGCATATTAGGTAATTTGGAGTAGT
TTCTGATGGTGTGCAGTTAAAATCTATGTTAGATTGTGTCTTTTTTTTTT
TTTTAATTACATGTATTTATTTGCCTTGTATATGTGGTGGCTGAACAGGG
CGTGCATGTGAGGCTCTGAGGACAACTAGCAAGAGACTGTTCTCTTTTTT
CACCTTGTGGGTTAAAGAAATTCAACTCGGGTCATCAGGCTGAGCAGCAA
GCATCCCCACTCACTGGCTGCCTTGCCAGCCCCTGGCTTGGTCCTTGTTT
CTGAAGATGTATTTGTGTATTTTTACATCTATGAGTGCTCTGCCTGCACA
TGCACTACATGTGTGTCTGGCGTCCCCTGAGGTCAGAAGTCGGTATTGGC
TTCCCTAGAACTGGAGTTACAGTTGGTTCTGAGCCACCTTGTGGGTGATA
AGAACTGAACCCGGTTCTTCTGCTAGAGCACTGAGTGTTCTTACCTCCTG
TAACATTGTTCCATCCCCCATTTTTGTTTCTTTTTTTATTTTACAACACA
AAATTATATAAATCACCTCTAACTTTTAACAATGGTCTTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCCATGGTTCCTGATGCATGCCTCTGATTGTGAAGTGAGTTTGT
TGGTTGGAAGCAATGCTGTGTGTGGTAAAGCTTGAAGCCTGTTTTCAAGT
TCCTGCCCCAGCTTCTCTCAATAATGAACACGTACATTTTATGATTCTGG
CCTTCCCCTCTCCTCCCTCCGTTTTTTGAGACAGGGTTTCACTGTATAAG
AGCCCTAATTGTCCCGGAACTCTCAACGTAGACCAGACTAGCCTCCAAAT
CACATATTTTTCACCTGTCTCTGCCTTCCAAATACTGGGACTAAAAAGCA
TGCACCACCACAGTGGAGTGACAGTGACCTTTTAATTACTATTCCACCAG
GCACAGCAAACCTCTTAACTAAAGGCTAGAGCCTGTGATTGAGCAGTGGA
AGGGAAAGGTGGAGCTTTTAGAGAGGGAGAAGAGAGGAAGGAGGAGAGGA
GAGGAGACAAGGAGATGGAGGAGACAGGGGAAGATGGAGGAAGAGGAGGT
GTTACTTTTTTTTCTTATATCCTCTCTTTCTCTTTATCTATATAACATTA
TATAAAATCTTTCAATTTCTCAATCTTAAATGCTACGCCTTTCTTTTTTT
TTTTTATTTTCCTATTTCACTTCTCTTTAATTTATCGTTATTTATCTTTC
TCTCATTTTCCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_c15.b1 MSMg01no416_c15.b1 CHROMAT_FILE:
MSMg01no416_c15.b1 PHD_FILE: MSMg01no416_c15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:44 2005
         (244 letters)



>mm_chr7_36536550_36537193
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtagcagagaaagctgtttaataagataaaaggtctctcagttggaaagctggaccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggtagcagagaaagctgtttaataagataaaaggtctctcagttggaaagctggaccat 385

                                                                       
Query: 61  ttggccaagctgatgaaaggcatattaggtaatttggagtagtttctgatggtgtgcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttggccaagctgatgaaaggcatattaggtaatttggagtagtttctgatggtgtgcagt 325

                                                                       
Query: 121 taaaatctatgttagattgtgtcttttttttttttttaattacatgtatttatttgcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taaaatctatgttagattgtgtcttttttttttttttaattacatgtatttatttgcctt 265

                                                                       
Query: 181 gtatatgtggtggctgaacagggcgtgcatgtgaggctctgaggacaactagcaagagac 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 264 gtatatgtggtggctgaacagggcatgcatgtgaggctctgaggacaactagcaagagac 205

               
Query: 241 tgtt 244
           ||||
Sbjct: 204 tgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)