BAC Information

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BAC

Clone NameMSMg01-416O05
Chromosome7 (Build37)
Map Location 4,766,083 - 4,766,331
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s
Downstream geneD430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416O05.T7 (MSMg01no416_o05.b1)MSMg01-416O05.TJ (MSMg01no416_o05.g1)
ACCAG512598AG512599
length7261,098
length of high quality
(start - end)
249 (50 - 298)---
definitionCHROMAT_FILE: MSMg01no416_o05.b1 PHD_FILE: MSMg01no416_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:36 2005CHROMAT_FILE: MSMg01no416_o05.g1 PHD_FILE: MSMg01no416_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCACTAATGCGAGAGGATGCCGCGGAATTCAGACTGTTTACAATCAC
AAGAACAAGCCACAGGAAACAAAAACCTGTTTTCCATAGAGGTATCTAAA
GTACAGTTTAAACATTTAGCTGAATAACATCAGCTGACAATTGGGGTAAT
CTGAAGCAAAGCCACTCCTAGCTGCTACATCTTGGAGGAGCACAGGAGAA
CAAAACACAGTCCAAGAACAATTCCATGTTTCGACGAAACAGCGGTCACA
AGACTCTTGTCTCACAAGCACTCAAAATCCTCCTGACATGACTCCATTCT
TGGACACTGTTCTCAAATAGAACAAATAGCTTGGTGGTTAAGAGCACTTG
TTGCTCTTACAGAGGACCTGAGTTCAGTTCCCCGTACCCTCATGGTAGTT
CTTACCACCAGTTACACCAGTTCCTGAGGGATTTGATACTCCCTTCTAAA
CTCCCTGATGATCGGGTATACTTACTGAGAACCAACCTCTATCCAGGGCC
ACACTCTTCAATGTTTCCAGATTAGTCTTTTATTACAATTCGTCTATTCC
TATTCTGTTGGCTTCTCATCTTTATCGCCTCCATTGTGTAACTATATCTT
GGCCCACCTCCGAATTCTATACCCGTCTACCTTTTCCTTCTACTATTGTC
ACGATTTCCATACTTATTTTTAAAATATTAATTTCTTTTTAGTAACCCAT
TTACCTTATCCTTCTAATTCTCTCCT
TCTTGTTTTTATAAATAATTCTNCTCCGCCTCCCCCAACCCAAACTTATA
CGATGAAATGAGTAACCCTGACAGACGCCTGTCTCCCCACAATTTAGGNG
ACACTATCACAACTTTCCCTCGCAATTCAAGNCCCCAGTAACTTATATAT
CTTATCACGGCTGAAAACGACGACGACTGCGATCACACTCGACTGTTCTC
CGTTTCCGTGTCTGTATAATATCTCTCACTACTCACTACATCACATTCTG
TTAAGGTAGTCGTGTACTTGTCAGCAATGTCATGACTACATACCATCATG
TCTCTGTATATAGGGCATACAAGCATATATAACAGCAATACTATAACATT
TCACCAATCTTCAACTGTCCAACCACTGCATCTTACTCCGATCACCACCT
ACTCTGCCAAAACACACAATACGCGACGCCACATACCCCTTTTCAATCAC
ATTACTCTCTTTATTACGTTTCTACTCTCCCGCTTATATTCTCATTCTGT
AAGTCCATAACACATTCATACCTCATGCTAACTCCCCACAAGTTTCATAC
CCACAAAAATATCCTCCTTTCTACCAACCTATTTTATCCATCCTTCTTCT
TTTCATACTCTTCCCATATACCCACTCTACTACTACTTACACACACTTTC
TATCATACAACCCACTATTCATATTGCTACTCATATCTTCGACTCCCATT
TCTTATATTCAAATTTCATATATATGTTTCTATTCTACATTTCTTCCTTC
ACATTCCATTCCTTCTGCCCTATCTCATCTTCCACTTATCATTCTTTTCT
TAACTCTCTTTTCTCTAACACAATTTATATACTCCAATACTTTATATATA
CTTAGTATTCTCAACCCATTCATAATTACATCTCACTTCTTCTAAACGTT
ATTACCTCAATATACTACCGAATTCCCATAACTACCAAACACAAACCGAC
CCTACCTCTATCCTTCCACTCCATTACCACACACCCAATCAATAACATTA
CCCTATATACTGATATCTATTCCTCTTTACTACAACAATCTGTTGACACC
CTCTCCACGAAGACACTTCACAATAACTTATCCTATCACCACTCAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_o05.b1 MSMg01no416_o05.b1 CHROMAT_FILE:
MSMg01no416_o05.b1 PHD_FILE: MSMg01no416_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:36 2005
         (249 letters)



>mm_chr7_4765883_4766531
          Length = 649

 Score =  431 bits (223), Expect = e-125
 Identities = 243/251 (96%), Gaps = 4/251 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagaacaagccacaggaaacaaaaacctgttttccatagaggtatctaaagtacagttt 60
           ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 449 caagaacaagccacacgaaacaaaaacctgttttccatagaggtatgtaaagtacagttt 390

                                                                       
Query: 61  aaacatttagctgaataacatcagctga--caattggggtaatctgaagcaaagccactc 118
           |||||||||||||||||||||||||  |  ||||||||||||||||||||||||||||||
Sbjct: 389 aaacatttagctgaataacatcagc--aagcaattggggtaatctgaagcaaagccactc 332

                                                                       
Query: 119 ctagctgctacatcttggaggagcacaggagaacaaaacacagtccaagaacaattccat 178
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 331 ctagctgctacatcttggaggagcacaggagtacaaaacacagtccaagaacaattccat 272

                                                                       
Query: 179 gtttcgacgaaacagcggtcacaagactcttgtctcacaagcactcaaaatcctcctgac 238
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gtttcgacgaaacagaggtcacaagactcttgtctcacaagcactcaaaatcctcctgac 212

                      
Query: 239 atgactccatt 249
           |||||||||||
Sbjct: 211 atgactccatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)