BAC Information

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BAC

Clone NameMSMg01-416P15
Chromosome7 (Build37)
Map Location 112,164,476 - 112,165,124
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1
Downstream geneOlfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416P15.T7 (MSMg01no416_p15.b1)MSMg01-416P15.TJ (MSMg01no416_p15.g1)
ACCAG512666AG512667
length713726
length of high quality
(start - end)		653 (36 - 688)597 (76 - 672)
definitionCHROMAT_FILE: MSMg01no416_p15.b1 PHD_FILE: MSMg01no416_p15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:43 2005CHROMAT_FILE: MSMg01no416_p15.g1 PHD_FILE: MSMg01no416_p15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:43 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGA
TTCTCCTACAGGATGTTCTCTGTGGCTACTCAATCAGTTCAGAATCTCCA
TCTAATTTTGCTTCATGCAGAATTGGAAAAGGGTGGATTTATTGACCACT
ATCTCCATTATCACATCTGGAATGTAGCTGACACCCAAAATACATTTGTT
GACTAAAGATTAAATATGTAGTAATTTCTTAATTTCAATTCTTGATTAAA
TTCCTTATATCATATAGGTACGGACAGAATCATGTTATCTATCTGCTGTT
TGGGAATGTATTATTAAGAAAGTAAATTAATTCTCATGAGAGAACTTGGT
AGGTATATGAAGAGATGAGTCTTATCAGAAGTCCTTGTGACACTGGGGCT
GTCAGCAAGTATGATGTAACACAGAGAGATTGTTGAAAGTAAGCTAAATA
AAGTTTAAGAAGCAGCTGACCATTACAATCAGAATCAGACAGCCAAAATT
AACTGAGGGTCTTTATACATAGTTCATCTTCACAAAGAATCAGGTCAGTT
ATACTATTATGCAAGCTGTATCAACTTGAAAAGCCATTTGAAAACCATTG
AAAATGTGACTTGCTGCATTTTCTAAAATCTGAGATAAGTCATTTTTTAT
AATATTGACTTATTTTTAACATACATGATTCTTTTCTCCACATTACAATG
TCCAAATCAACAA

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAAGTGACAGCAGAGGCTGGCGAGGATGTGGAGAAAGAGGAA
CAGTCCTCCATTATTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAA
TCAGTCTGGTGGTTCCTTAGAAAATTGGACATAGTACTACTGGAGGATCC
AGCAATACCTCTCCTGGTCATATATCCAGAAGATGTTCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCTTAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATAAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAATCCAATCACAAAGGAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCAAAACTTAGGATACCCAAGATAGAAGATCCAATGTGC
TAAACGCATGACACTCAAGAAGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_p15.b1 MSMg01no416_p15.b1 CHROMAT_FILE:
MSMg01no416_p15.b1 PHD_FILE: MSMg01no416_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:43 2005
         (653 letters)



>mm_chr7_112164272_112165324
          Length = 1053

 Score = 1133 bits (586), Expect = 0.0
 Identities = 634/650 (97%), Gaps = 2/650 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgattctcctacaggatgttctctgtggctactcaatcagttcagaatctcc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgattctgctacaggatgttctctgtggctactcaatcagttcagaatctcc 264

                                                                       
Query: 65  atctaattttgcttcatgcagaattggaaaagggtggatttattgaccactatctccatt 124
           |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 265 atctaattatgcttcatgcagaattggaaaagggtggatttattaatcactatctccatt 324

                                                                       
Query: 125 atcacatctggaatgtagctgaca-cccaaaatacatttgttgactaaagattaaatatg 183
           |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 atcacatctggaatgtagct-acaacccaaaatacatttgttgactaaagattaaatatg 383

                                                                       
Query: 184 tagtaatttcttaatttcaattcttgattaaattccttatatcatataggtacggacaga 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 384 tagtaatttcttaatttcaattcttgattaaattccttatatcatataggtacgaacaga 443

                                                                       
Query: 244 atcatgttatctatctgctgtttgggaatgtattattaagaaagtaaattaattctcatg 303
           ||||||||||||||||||||||||||||||||  |  |||||||||||||||||||||||
Sbjct: 444 atcatgttatctatctgctgtttgggaatgtaggaacaagaaagtaaattaattctcatg 503

                                                                       
Query: 304 agagaacttggtaggtatatgaagagatgagtcttatcagaagtccttgtgacactgggg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agagaacttggtaggtatatgaagagatgagtcttatcagaagtccttgtgacactgggg 563

                                                                       
Query: 364 ctgtcagcaagtatgatgtaacacagagagattgttgaaagtaagctaaataaagtttaa 423
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 564 ctgtcagcaagtatgatgtaacacggagagattgttgaaagtaagctaaataaagtttaa 623

                                                                       
Query: 424 gaagcagctgaccattacaatcagaatcagacagccaaaattaactgagggtctttatac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaagcagctgaccattacaatcagaatcagacagccaaaattaactgagggtctttatac 683

                                                                       
Query: 484 atagttcatcttcacaaagaatcaggtcagttatactattatgcaagctgtatcaacttg 543
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 684 atagttcatcttcacaaagaatcaggtcagttatactattatacaagctgtatcaacttg 743

                                                                       
Query: 544 aaaagccatttgaaaaccattgaaaatgtgacttgctgcattttctaaaatctgagataa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaaagccatttgaaaaccattgaaaatgtgacttgctgcattttctaaaatctgagataa 803

                                                             
Query: 604 gtcattttttataatattgacttatttttaacatacatgattcttttctc 653
           |||||||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct: 804 gtcattttttttaatgttgacttacttttaacatacatgattcttttctc 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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