Query= MSMg01no417_a10.b1 MSMg01no417_a10.b1 CHROMAT_FILE:
MSMg01no417_a10.b1 PHD_FILE: MSMg01no417_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:47 2005
(554 letters)
>mm_chr7_78128924_78129878
Length = 955
Score = 897 bits (464), Expect = 0.0
Identities = 517/536 (96%), Gaps = 5/536 (0%)
Strand = Plus / Minus
Query: 19 gaacttggtgagaattctttaaagaaacctcaaaaggtgtgtggtcctccaagcctcgat 78
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 752 gaacttggtgagaattctttaaagaaacctcaaaaggtgtgtggtcctccaagactcgat 693
Query: 79 tcttaccttttcccttctataccaaaccaatatgagatgagcttaacagcaattcactaa 138
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 692 tcttaccttttcccttctataccaaaccaatgtgagatgagcttaacagcaattcactaa 633
Query: 139 caggaacatccccacattcctagcagctgctgttcccaggtggctgctctgggtaagcag 198
||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 632 caggaacattccaacattcctagcagctgctgttcccaggtgtctgctctgggtaagcag 573
Query: 199 -ttctacacttggtattttagacttggattgtgtctgtggaaggaaattcacagtctata 257
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tttctacacttggtactttagacttggattgtgtctgtggaaggaaattcacagtctata 513
Query: 258 tgaatcttctgaggggcctaagaaatgcagttgattttctctgtccagctttatcttgtt 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tgaatcttctgaggggcctaagaaatgcagttgattttctctgtccagctttatcttgtt 453
Query: 318 acacatgaagagggtttgctgatatgcaagcccattgcccactgatgttaggagcaaaag 377
|||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||
Sbjct: 452 acacatgaagagggtttgctgatatgtaaacccattgtccactgatgttaggagcaaaag 393
Query: 378 tccatataaagtctaaaaactaaaaacaatggcagttaataaacaagaagtttggatttg 437
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 392 tccatacaaagtctaaaaactaaaaacaatggcagttaataaacaagaagtctggatttg 333
Query: 438 agaaccactgaagtagtgaaggcagc--cttaaagcagaggaaagccaaatcattcatta 495
|||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct: 332 agaaccactgaagtagggaaggc--cttcttaaagcagaggaaagccaaatcattcatta 275
Query: 496 attcaagagccttatgaagttcaagagagaaagagtggaaaaaggaactgggaagt 551
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 274 attcaagagccttaggaagttcaagagagaaagagtggaaagaggaactgggaagt 219
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 955
Length adjustment: 10
Effective length of query: 544
Effective length of database: 945
Effective search space: 514080
Effective search space used: 514080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_a10.g1 MSMg01no417_a10.g1 CHROMAT_FILE:
MSMg01no417_a10.g1 PHD_FILE: MSMg01no417_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:47 2005
(516 letters)
>mm_chr7_77970921_77971835
Length = 915
Score = 959 bits (496), Expect = 0.0
Identities = 511/516 (99%), Gaps = 1/516 (0%)
Strand = Plus / Plus
Query: 1 aacgtgtgagtcatccacggccatgtgacttgttttgattaatgatttccccagggaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacgtgtgagtcatccacggccatgtgacttgttttgattaatgatttccccagggaggc 260
Query: 61 aatgtcttttggaaaagggaaagaagcctgagaaccagcattctatttttctgcccttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 aatgtcttttggaaaagggaaagaagcctgagaaccagcattctatttt-ctgcccttcc 319
Query: 121 cccaccccccagcacagcaaactctgtgtgacaatgagatttttgggccaggtgaaatgt 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 320 cccaccccccagcacagcaaactctgtgtgacgatgagatttttgggccaggtgaaatgt 379
Query: 181 catgggatgctaagtggacacagagacagcagctgctcagaagaatgttctggaacacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 catgggatgctaagtggacacagagacagcagctgctcagaagaatgttctggaacacca 439
Query: 241 catgttgctcctgtttggtgaatatacttttatgttctgggacatttggaagcacagcaa 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 catgttgctcctgtctggtgaatatacttttatgttctgggacatttggaagcacagcaa 499
Query: 301 agtttaagaaagctgattttggcttggttcattcaaagtcagaccttaccttaagggttt 360
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 500 agtttaagaaagcggattttggcttggttcattcaaagtcagaccttaccttaagggtct 559
Query: 361 ctttgattctctgcctcacccttctcttctgataaatggaaaaatagcagattgcatctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctttgattctctgcctcacccttctcttctgataaatggaaaaatagcagattgcatctg 619
Query: 421 tctcatatgactgaagaaaagaaaaatgtacacataagatcttgggacaaagcattgttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctcatatgactgaagaaaagaaaaatgtacacataagatcttgggacaaagcattgttt 679
Query: 481 atagtgactattcttccaaaaaatgtttaatagatt 516
||||||||||||||||||||||||||||||||||||
Sbjct: 680 atagtgactattcttccaaaaaatgtttaatagatt 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 915
Length adjustment: 10
Effective length of query: 506
Effective length of database: 905
Effective search space: 457930
Effective search space used: 457930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
