BAC Information

Click to search

BAC

Clone NameMSMg01-417B01
Chromosome7 (Build37)
Map Location 96,222,007 - 96,222,368
singlet/doubletsinglet
Overlap genenone
Upstream geneGrm5, Ctsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562
Downstream geneTmem135, LOC100039969, Fzd4, Prss23, LOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417B01.T7 (MSMg01no417_b01.b1)MSMg01-417B01.TJ (MSMg01no417_b01.g1)
ACCAG512734AG512735
length728692
length of high quality
(start - end)
368 (49 - 416)---
definitionCHROMAT_FILE: MSMg01no417_b01.b1 PHD_FILE: MSMg01no417_b01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:50 2005CHROMAT_FILE: MSMg01no417_b01.g1 PHD_FILE: MSMg01no417_b01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTACTGACTGTTGGACTCATCCTTTCTGAAATTAGTGCTTGGG
GGTAAGCTGAGTGGCGGCTGTCCATGTTTTTCTGTGCTATCCAAATCCTT
TCCATTCACACATACTCTGTGGGTTGGAGTCACTGACACAGATCTTGTCT
TTGATAAGAAATTTCATCTATTGCTTGTATGCTTAAATTTTACTTTCCAA
ACTCAGAGATTAAATATCCCCATGCAAAGAGTTTCAATTAATCACCACAG
AGATCGAGTCACCAAAGGCAATGACAACATCTTCTGGACACTCCTGGGTC
TTCAGCTGCTATCAACATCCTTTTCTTCCCCCCGCTAAATGCAAACATTT
ATCTTGGTGTGACCAGAACTGGNAATGCTTTCTCTAAGTCTTTTAAAGAT
TTAATCACTGGGTCCACTTCAAAGGGAAAGGGGATTTATATTCCCTGGGA
ATATTTATTTCTTCCGCCCCCCAAAAAATTTTTGGCCCCCTCNTGNNCNN
NNAANAAAAAAAAAAAAAGATTTTTTTTTTTTTTTCTCCCCCCCCCAAAA
AAAAAAAANAAANNCCCCTCTCTTCTNTTTTTCCCCTCTTTTATAGTTTT
ACGNTTTCATCNTNNNNNNNNAAAANTACTNNNNTTAATTTTTTTATTTT
ACACACTACGCGCCGTACGGAACNACAG
NTTCATGCAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXNAGTGTTATTTCCCCCGGNNCCGGGNNGGNNNNNNAAAAAAA
AATTTNTTTTCCCCTTTGGGGGTTTTCCCCTTTTTTTAAAATTTTTTTTT
TTTTTCCCCCAAGGGNAAAGAGTTTAAAAAAGGCCCAAACCTTTTTTTTA
AAGGCCCCAAAAAAATGGGGTAATTCTGGGTTTTCCCTGGGTGGGAATTG
GGCCCCTTTCAAGTCCCCCATGGGGAATTTTTAAGAAAAATTGGGAACCT
TTTAATTGGGCCCATTGGAAATTTCCCCGGGAAAATTGGGGTTTTTAAAA
AATAAAAAATTTTCCCCCTTTTCCTTGGGGGTTTTTCAAAAAGAGGGCCC
CCCTTCCCCCCCCTTTTTAAAAACTATTTATAAACACCCCTTTTTTAAAT
ATTTTTTTTTTCACCACAAAAGGAAGGAGGGANAANATTTATTTTTTTTG
TTGNCTTTGTGGGGGGGCGGGGGCGGTCTGCCTGTATCTCTGGGGTGTTG
GGGGGGGGGGGGGTTTCTTCAAAAAAAAATCTTCTCCCCCGGGGGGGGAG
AAAAAAGGGGGGGGGGGGGTTGTTTTTTTTTTTTTTTTTTCCTACGCGGG
GGGGGGGGGGTGTTTTTTTTCTCTCGGCAGGGGGGGGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_b01.b1 MSMg01no417_b01.b1 CHROMAT_FILE:
MSMg01no417_b01.b1 PHD_FILE: MSMg01no417_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:50 2005
         (368 letters)



>mm_chr7_96221803_96222568
          Length = 766

 Score =  681 bits (352), Expect = 0.0
 Identities = 361/364 (99%), Gaps = 2/364 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctactgactgttggactcatcctttctgaaattagtgcttgggggtaagctgagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gaattctactgactgttggactcatcctttctgaaattagtgcttgggggtaagctgagt 507

                                                                       
Query: 65  ggcggctgtccatgtttttctgtgctatccaaatcctttccattcacacatactctgtgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggcggctgtccatgtttttctgtgctatccaaatcctttccattcacacatactctgtgg 447

                                                                       
Query: 125 gttggagtcactgacacagatcttgtctttgataagaaatttcatctattgcttgtatgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gttggagtcactgacacagatcttgtctttgataagaaatttcatctattgcttgtatgc 387

                                                                       
Query: 185 ttaaattttactttccaaactcagagattaaatatccccatgcaaagagtttcaattaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttaaattttactttccaaactcagagattaaatatccccatgcaaagagtttcaattaat 327

                                                                       
Query: 245 caccacagagatcgagtcaccaaaggcaatgacaacatcttctggacactcctgggtctt 304
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 caccacagaaatcgagtcaccaaaggcaatgacaacatcttctggacactcctgggtctt 267

                                                                       
Query: 305 cagctgctatcaacatccttttcttccccccgctaaatgcaaacatttatcttggtgtga 364
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 266 cagctgctatcaacatccttttctt-cccccgctaaatgcaaacatttatctt-gtgtga 209

               
Query: 365 ccag 368
           ||||
Sbjct: 208 ccag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 766
Length adjustment: 9
Effective length of query: 359
Effective length of database: 757
Effective search space:   271763
Effective search space used:   271763
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)