BAC Information

Click to search

BAC

Clone NameMSMg01-417F20
Chromosome7 (Build37)
Map Location 134,402,105 - 134,402,640
singlet/doubletsinglet
Overlap gene2410015N17Rik
Upstream geneSbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771
Downstream geneSephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417F20.T7 (MSMg01no417_f20.b1)MSMg01-417F20.TJ (MSMg01no417_f20.g1)
ACCAG512963AG512964
length772787
length of high quality
(start - end)		535 (44 - 578)418 (74 - 491)
definitionCHROMAT_FILE: MSMg01no417_f20.b1 PHD_FILE: MSMg01no417_f20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:13 2005CHROMAT_FILE: MSMg01no417_f20.g1 PHD_FILE: MSMg01no417_f20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCCCAGATTCTAACTTGCCCCTTCTCTCACTATTTAAAAAAAAAACA
GATTTATTTATTCTGCAGACATATGTAAGCACATGTTTGCATGTATACTA
TGTATATGCAGGAACCTTTAAGGCTAGAAAAGAGTGTCAGATCCCCTGAA
ACTGGAGTTATGGGACGTTGTGACCTGGCACAGGGGTGCTGGGAACTGAC
TCAGCTCTTCTGCAAGAGCAGGAAGTGCTCATCAGCACTGAGACATCTCA
GCAGCCCCTGCACTACCTTTGTAAAGGAAGTTCTCTGTCTGGCAGGCTAC
CTTTTAAAATTCCTTATTTCAGCCTTACACAGAGGTAAAATGCTGGTGAC
AACTGTTCACCACCCCCGTCCCCATATACCTTCTTTTTTCCTTTGAGACA
GGGTCTCTCTGTGTACCCCTGGTTGTCATAAAACTCATGCTGTAAAGCAG
GCTGGCCTCAAAGTTACATATTCACCTGCCTGCCTTCTGAATACTGGATT
AAAAACGTGCACCACCACAGCCCTGCTGACAACTGTTCTTCTTAGACCTA
GGTCTGCCTCACTGTTTCTACATTTCACTCTCCCTGGAAACTGTCCCCAG
CACCCACCAGTGCTGGGACTCGTCTGTCATCTCTGTATCCCTACCGCAGC
ACAGAATACAGCAGTAAGGAAATATAAACCACCCCGGCTTTTGATGCTTA
AACAAATCGGTTTCCCCCCCCC

ATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTTCAAACATGGCTACTTCCTTCTA
CAAACTAACCATACCTTCATTGTTTGGGGTTAAAGGTTTATACTAAGGGC
TGTGCCACATCACAACTAGAGATAGTTTTTTCAGTAAATAACACGATCTC
ATGGTTCATAGGGTGATCAAATATCCTGCAGCAGAAGTCCATGTTGCAGA
ATGGGTTGTCCTCTTTGCTTGTTTATTGAATTCCTTCTCTTTTGAGGTCA
TCTTTTGATGACCGTTTACAAGGGATACAATTATGTTCACAGCCGGGTGG
TGGTGGCGCCCGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTAGG
TTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCC
AGGGCTACACAGAGAAACCCTGTCTAGGAGAAACAAAAAACTTTATCAAA
CAACCACAAAAAAACCAATTATGTTCACATTCTTTGCCCATGTGGAAGGA
TCTAGCTGTATACTTCCCCCAATGTCTTTCTCACTACATTTCTTCCAAGT
CCTTGATTTTCCCAGCTAGCCTTTGGCTTTTGTCCATGAAATAATGAACA
CCTGCTCTTCTGGTTCATTCCCCCTCTCCCCGTTAAATATGTTGGTTTTC
GTTATCTTCTCCACATTTTTGCCTTTTTTGTATAAATTTTTTTCTTTTTG
CTTCTCCCCCTGTTCTGCTCCCCCACTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_f20.b1 MSMg01no417_f20.b1 CHROMAT_FILE:
MSMg01no417_f20.b1 PHD_FILE: MSMg01no417_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:13 2005
         (535 letters)



>mm_chr7_134401906_134402840
          Length = 935

 Score =  946 bits (489), Expect = 0.0
 Identities = 523/537 (97%), Gaps = 7/537 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcccagattctaacttgccccttctctcactatttaaaaaaaaaa-----caga 59
           ||||||||||||||| |||||||||||||||||||||||| ||||||||||     ||||
Sbjct: 200 gaattctcccagattttaacttgccccttctctcactattaaaaaaaaaaacaaaccaga 259

                                                                       
Query: 60  tttatttattctgcagacatatgtaagcacatgtttgcatgtatactatgtatatgcagg 119
           |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 260 tttatttattctgcagacatatgtaagcacgtgtttgcatgtatactatgcatatgcagg 319

                                                                       
Query: 120 aacctttaaggctagaaaagagtgtcagatcccctgaaactggagttatgggacgttgtg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aacctttaaggctagaaaagagtgtcagatcccctgaaactggagttatgggacgttgtg 379

                                                                       
Query: 180 acctggcacaggggtgctgggaactgactcagctcttctgcaagagcaggaagtgctcat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acctggcacaggggtgctgggaactgactcagctcttctgcaagagcaggaagtgctcat 439

                                                                       
Query: 240 cagcactgagacatctcagcagcccctgcactacctttgtaaaggaagttctctgtctgg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cagcactgagacatctcagcagcccctgcactacctttgtaaaggaagttctctgtctgg 499

                                                                       
Query: 300 caggctacc-ttttaaaattccttatttcagccttacacagaggtaaaatgctggtgaca 358
           ||||| ||| ||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 500 caggccacccttttaaa-ttccttatttcagccttacacagaggtaaaatgccggtgaca 558

                                                                       
Query: 359 actgttcaccacccccgtccccatataccttcttttttcctttgagacagggtctctctg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 actgttcaccacccccgtccccatataccttcttttttcctttgagacagggtctctctg 618

                                                                       
Query: 419 tgtacccctggttgtcataaaactcatgctgtaaagcaggctggcctcaaagttacatat 478
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgtacccctggctgtcataaaactcatgctgtaaagcaggctggcctcaaagttacatat 678

                                                                    
Query: 479 tcacctgcctgccttctgaatactggattaaaaacgtgcaccaccacagccctgctg 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tcacctgcctgccttctgaatactggattaaaaacgtgcaccaccacagccctgctg 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |