Query= MSMg01no417_i23.b1 MSMg01no417_i23.b1 CHROMAT_FILE:
MSMg01no417_i23.b1 PHD_FILE: MSMg01no417_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:28 2005
(568 letters)
>mm_chr7_121772546_121773512
Length = 967
Score = 1021 bits (528), Expect = 0.0
Identities = 558/568 (98%), Gaps = 1/568 (0%)
Strand = Plus / Minus
Query: 1 cagtggctataagtttgttgacaattctgttttcctgcctaaagccattgtatattactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 cagtggctataagtttgttgacaattctgttttcctgcctaaagccattgtatattactt 708
Query: 61 aaggttgtacaaaatccaactccatccttcttattcatttgagtaattatgatcaatgga 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 707 aaggttgtacaaaatccaactccatccttcttattcatttgagt-attatgatcaatgga 649
Query: 121 aaggcaaggaacacactaggtatgatacctatgattaggtaaataagttaaaagtaagga 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 648 aaggcaaggaacacactaggtatgatacctacgattaggtaaataagttaaaagtaagga 589
Query: 181 aaacaaaaatgttttagtcttgcacctagggttacttcatacttacactgaattcacacc 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 588 aaacaaaaatgttttagtcttgcacctagggttacttcatacttacaccgaattcacacc 529
Query: 241 agaatctcatggatactttcaaaatggctcaggagtccatacagtgaatgaataattaac 300
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 528 agaatctcatggatattttcaaaatggctcaggagttcatacagtgaatgaataattaac 469
Query: 301 tcgaaccctcaaacagcatcaggctcagaaacctaagaatcaatagatattagtggcaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tcgaaccctcaaacagcatcaggctcagaaacctaagaatcaatagatattagtggcaca 409
Query: 361 gcaggtgatatcacactataggaaccattgctttcagtgggaatcgagcatcactgttta 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 408 gcaggtgatatcacactataggaaccattgctttcagtgggaatggagcatcactgttta 349
Query: 421 ctcttcgcatgctgtttagaccatcccaggaaagaggggtcttctaatgccaataaacag 480
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 348 ctcttcgcatgctacttagaccatcccaggaaagagggatcttctaatgccaataaacag 289
Query: 481 gggttgcagtgtccatgctgtggctaaatggataaatgctcccaatccttcaccaagcta 540
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 288 gggttgcagtgtccatgctgtggctaaatggataaatgctcccaacccttcaccaagcta 229
Query: 541 tagaattattatgtactttcatcctgcc 568
||||||||||||||||||||||||||||
Sbjct: 228 tagaattattatgtactttcatcctgcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 967
Length adjustment: 10
Effective length of query: 558
Effective length of database: 957
Effective search space: 534006
Effective search space used: 534006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_i23.g1 MSMg01no417_i23.g1 CHROMAT_FILE:
MSMg01no417_i23.g1 PHD_FILE: MSMg01no417_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:28 2005
(501 letters)
>mm_chr7_121631707_121632611
Length = 905
Score = 888 bits (459), Expect = 0.0
Identities = 492/507 (97%), Gaps = 8/507 (1%)
Strand = Plus / Plus
Query: 1 attaagggaaacgaccttcagtagaaaatgctacagtacagaggacctaaaagtagtgag 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 attaagggaaacgaccttcagtagaaaatgctacagtacagaggacctagaagtagtgag 260
Query: 61 cagagaggaaaaaccttacatattgtaaggtttcatgaacatgtaggattacagtggctt 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 cagagaggaaaaaccttacatattgtaaggtttcatgaacatgtaggattgcagtggctt 320
Query: 121 ctgagtaggccattttgcatttgtctgaatgttagcaaagatggaatcagtcttagaagc 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 ctgagtaggccattttgcatttgtctgaatgttcgcaaagatggaatcagtcttagaagc 380
Query: 181 agcagcaggggtccttcatgctgacatcttccaacccattttcattacaattctctgctc 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 agcagcaggggtccttcatgctgacatcttccaacccattttcattgcaattctctgctc 440
Query: 241 ctgctcaggaaggtctttagaaattttcttttttgcaatggtttctccctttcctaggta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgctcaggaaggtctttagaaattttcttttttgcaatggtttctccctttcctaggta 500
Query: 301 ctttaataccacaaatatacagcagatatcttttatatatttatgtagtatgggttttga 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttaataccacaaatatacagcatatatcttttatatatttatgtagtatgggttttga 560
Query: 361 ttaaggtttattgggagcctctaccaagaatactaggtctgaatataaata------cca 414
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 ttaaggtttattgggagcctctaccaagaatactaggtctgaatataaatataaatacca 620
Query: 415 ataaatactaatacttattggtaaaattgagaaaaaaaatcaggtttataaaagtcataa 474
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 ataaatactaatacttattggtaaaattgagaaaaaa--tcaggtttataaaagtcataa 678
Query: 475 taatgagaggtgagtgtttttctatta 501
||||||||||||| |||| ||||||||
Sbjct: 679 taatgagaggtgattgttcttctatta 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 905
Length adjustment: 10
Effective length of query: 491
Effective length of database: 895
Effective search space: 439445
Effective search space used: 439445
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
