BAC Information

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BAC

Clone NameMSMg01-417M09
Chromosome7 (Build37)
Map Location 108,575,301 - 108,575,488
singlet/doubletsinglet
Overlap genePde2a
Upstream geneAU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2
Downstream geneArt2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog, Stim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417M09.T7 (MSMg01no417_m09.b1)MSMg01-417M09.TJ (MSMg01no417_m09.g1)
ACCAG513275AG513276
length1,128777
length of high quality
(start - end)
---190 (127 - 316)
definitionCHROMAT_FILE: MSMg01no417_m09.b1 PHD_FILE: MSMg01no417_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:46 2005CHROMAT_FILE: MSMg01no417_m09.g1 PHD_FILE: MSMg01no417_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATCAAAAAATTTGNGGGCACGCAAAAAGAGACCCAACGAATACAAAAG
AAGAGATGGCCGCGGAAANNCCATTATTTCCACAACAAAGAACCGGCGCA
TGAAACTCCACAGCACGATCCTACCTGTTTCCCTCGCCTCGCCTGATTTG
CCTAGCGCCCTTATCGCGCGTCACTCACCTATCTACTCCACCAGCACATT
TCCCTCTATTCGCCTATCACAATAACTCGTCTCTCACCGAGCCATCTTTC
GCGGCATGACCCATCCTCCTGCTTACGCTCTGCTTCCTACACCCACTTTC
CCATACACCCATGCCTCATCAGTATGCTTTTACTAGACTGTATCGTCACG
GTCTTCTCACACCCACCCACCTCTCTCTCGTCATCACTGTACAGTGCCCT
TCATAGGCACAAACATTTTTTTTTCCGAATCCTCACTCCGCTTACTCGTT
TTATTACTGCTCCCGCCCTCTTACTACCTATTCCTTTTATACGCATCATA
TTTTGTCACCCACCTGTGATGCACGTCTTCACCACCCATATCATCCCCCT
TTCCTTCACATTTTTTCTACAATCCTTCTATATGCACGCCGATTTTTATA
AACCTTTTCCCGTTTACATTCCCTCACCACTACTCATTTTATCTCCTCCG
CCACTCTTCTGGGCTCTATAATGCTTATATTTTCTTCGACTCTACAAAGC
TTTTACCCCTATCCTCTACTTAAATATACTCGCATCCCCTATTCTCTTTC
ACTCTCCTTTATGTTCTTACCCTTCCTTTCACATTCAACTCTATCTCTGT
AGCGCCTCGATCTATCCACTTACTCTTTTCACCACCTATAAATCTCGTAT
TAATCTAGATCAACACACCTACCTACACGCCCNTATATTGCCTCTCACTT
ATATTCGCCTTTTATAGACTCCTTCTGTACTTATTAATTCGCGCTAAATC
ACGATTTCTCTATTTATTTCCTCCTTCCCCTATACCTTACCGCATTTTAT
CCCTCTACTATTTATCTCGCGCTCTTCACCCTCCACACGATTTCTTCGCC
TCTCTCCCAGCGCATCATATTCACTCTAATATTTATTACACTCGAGCAAT
GTAACCATATCTACGCTTGTCTATTTCG
TCGATGCTGTGTGTAGGCCGGGGGGCCGCCTGTTTCAAAACATGTAGGTG
AACTATAGATGTACCAGCAGAATTCGGTGAGGGCTCATATAGAGGCTAGC
TGCTGTCACTGTAGAACACCCACACTCACCTACACTTTTAGACCACGGCT
AGGAGCCCAGAGAGCGTCAGTGTGTGGGAAAGACAGGAGGCGGTGGGTGT
GGTGAGAGGCACAGATGCTCTGTGGGCAGAAGGAGGTGTCTGATGGACAT
AAGACCACCTTTCTAGGCTGCACCTGCCTGGTCTGAGGCCAACCCCCAGA
GGGTACATTGGAAGTATTTTTCTCTGATGAAGGGGTTAAACTCGTGGCCA
CACCCACATCTTCTTGAGTCATTACGGGAATTGTAGTTCGGCGTGACCTT
GTACTACTTTCACTTGCCCTCATCTCTTTTTAGTCAAATCTACACCCTGT
TGCTTAGGCTGGTATTTGTCCCGTCCCTTTATTTTCCTCCTTTTATCTCG
CTACTTTCTCTTTTGTTCCCTTTTTGCTCTCTTCCCTCGCTTTCGCCCGC
CCTGTTTCCCTTTCCCTCCTTCCCCTTTCCCTTTCCCTCTTTTTCCTCCT
CCTTCCTTTCCCCTTTCCTCCCCACCTTTCCCCCTTTTTCCTTCTCTTTC
CCTCCTCCTCTTTTTTTTCTCCCCTTTTCCTCCCCCCCCCCTTTCCCCTT
CTCCTCTTTTTTTTCCTTCCTTCTTTTCTCCCTTTCCCTTTCTTTCTCTG
CCCCTTCTTCTCCTCCTCTCCTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_m09.g1 MSMg01no417_m09.g1 CHROMAT_FILE:
MSMg01no417_m09.g1 PHD_FILE: MSMg01no417_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:46 2005
         (190 letters)



>mm_chr7_108575101_108575690
          Length = 590

 Score =  356 bits (184), Expect = e-103
 Identities = 187/188 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacctacacttttagaccacggctaggagcccagagagcgtcagtgtgtgggaaagacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacctacacttttagaccacggctaggagcccagagagcgtcagtgtgtgggaaagacag 260

                                                                       
Query: 61  gaggcggtgggtgtggtgagaggcacagatgctctgtgggcagaaggaggtgtctgatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggcggtgggtgtggtgagaggcacagatgctctgtgggcagaaggaggtgtctgatgg 320

                                                                       
Query: 121 acataagaccacctttctaggctgcacctgcctggtctgaggccaacccccagagggtac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 acataagaccacctttctaggctgcacctgcctggtctgaggccaacccccagaaggtac 380

                   
Query: 181 attggaag 188
           ||||||||
Sbjct: 381 attggaag 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)