BAC Information

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BAC

Clone NameMSMg01-417N17
Chromosome7 (Build37)
Map Location 81,142,631 - 81,294,172
singlet/doubletdoublet
Overlap geneSt8sia2, LOC100042127
Upstream geneLOC625243, 4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik
Downstream geneLOC100042140, LOC546979, Slco3a1, EG665308, EG665641, 0610006L08Rik, Sv2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417N17.T7 (MSMg01no417_n17.b1)MSMg01-417N17.TJ (MSMg01no417_n17.g1)
ACCAG513338AG513339
length784778
length of high quality
(start - end)		524 (45 - 568)493 (72 - 564)
definitionCHROMAT_FILE: MSMg01no417_n17.b1 PHD_FILE: MSMg01no417_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:52 2005CHROMAT_FILE: MSMg01no417_n17.g1 PHD_FILE: MSMg01no417_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,142,631 - 81,143,151)(81,293,797 - 81,294,172)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCTAGTTATTACTAGACAGTCACCGGAGAAGCTGGAGTGCTGTCA
ATGCTTTTTTTGAAATCATTTCTTAACCCTTCCTGTCAGTGCAAGGATAC
TAACCTGGGGCAGACCCTACTCATTGTGATTCCGTTTGGTAATGTGGGTG
GTTCTCTCAACTCCCGTGCTCTCCTTGCCCCTAATAAACTGCTCTTTGCT
GGCACATTATTTGTTCAAAGAAAGCACTTCAGGAGTCCACTGTGGTTCCT
TTTTCTTTGAGAATCATTTGGACTTATGAATCCTGTGCCTGTCACTTGAA
GGGTTCACAAAGTACCTAAGCTCTGCCATTACAGGGCTTTGGCTCCTTAA
AGTAAGCCAGACACCTCTCCTCCTCCAAACCACATTGTCTGTTAAATTTT
TATTTGTTTTAACAGAGCATTCACTGCCAAGGTCAGGGGTTGCAACTAGG
CTGATGGCAGACCACAGGCATGGGCCCTTTGTTGGCAACGATGAGGTTTC
CTGATAGCCAAATGAAGATGGCTTGCCAAGTCACCCAGTTTAGCCGAGCC
TAATGGGAACTGTTCTGCGTCCAGCTATGCTCAGCCAAGAACTTTTGCGA
AATGGGGTATGTTGACCATTATTATCCAGAACGCTGGTTCCAAGGTGATT
TAAAGTTTTTCTCCCCCGAAACTGATTGTGGGAAAAAAAGCCAACCGATT
ATTAATTTTTTTAAACCTTTTCCTCACCGGGAAN

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATTGCTGTGAAGAGATGCCATGACCATA
GCAACTCTTATAAAGGAAAACACTTAACTGGGACTGGCTTGCAGTTCAAA
GGTTTATTCCATTGTTGTCATGGTAGAAAGCATGGTGCCATGCTTGAGAG
GTAGCTGTGAGTTCTACATCTGGATCCACAGACAGTAGGAAGAGAGAAAC
ACTGGCTTGAGTGTCTGAAGCCTCAAAACCGACTCACAGTGACACACTTC
CTTCAACTAGGCCACACCTACTCCGACAAGGCCAGACACTGCCACTACAT
ATGAGCTTTTGAAGGCTATTTTCATTCAAACCACCACATAGTTGTTCAAA
TGGGAGATCAAATGACAAATAGTTTAATTTCTCCTAGCATGTAATTGGTT
AAAGAGACACAGATCAAAGCTTAAGAATCGAAGGTCTTCTTAGGGCAGTT
GTCATTGCTGTGTATGATTAGTAGGCACAGCCAGAGAAGATAAAGGAAAT
GGCATGAACCTCTCAAAAAGATTTTCATGACCAATAAAGTTCAATGGATT
AGTCAGGATTGCATTACTATATTGGAATGACTGAAACTGAATAACCTCCT
GAAAAAAGAGGTTTATTTATTTCTTGAGAGCCTTTTTCTATCCAAGTCTT
GATGCCATGTAAGGAATTACTTGGCACAAAAAAAAAAATGGGTGTAAAGT
ACCTTTCTCCCTAAGCTTCAAATTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_n17.b1 MSMg01no417_n17.b1 CHROMAT_FILE:
MSMg01no417_n17.b1 PHD_FILE: MSMg01no417_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:52 2005
         (524 letters)



>mm_chr7_81142428_81143351
          Length = 924

 Score =  977 bits (505), Expect = 0.0
 Identities = 517/521 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctctagttattactagacagtcaccggagaagctggagtgctgtcaatgcttt 63
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctctaggaattactagacagtcaccggagaagctggagtgctgtcaatgcttt 263

                                                                       
Query: 64  ttttgaaatcatttcttaacccttcctgtcagtgcaaggatactaacctggggcagaccc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttttgaaatcatttcttaacccttcctgtcagtgcaaggatactaacctggggcagaccc 323

                                                                       
Query: 124 tactcattgtgattccgtttggtaatgtgggtggttctctcaactcccgtgctctccttg 183
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tactcattgtggttccgtttggtaatgtgggtggttctctcaactcccgtgctctccttg 383

                                                                       
Query: 184 cccctaataaactgctctttgctggcacattatttgttcaaagaaagcacttcaggagtc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cccctaataaactgctctttgctggcacattatttgttcaaagaaagcacttcaggagtc 443

                                                                       
Query: 244 cactgtggttcctttttctttgagaatcatttggacttatgaatcctgtgcctgtcactt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cactgtggttcctttttctttgagaatcatttggacttatgaatcctgtgcctgtcactt 503

                                                                       
Query: 304 gaagggttcacaaagtacctaagctctgccattacagggctttggctccttaaagtaagc 363
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 504 gaagggttcacaaagtacctaagctctgccattacagggctttggctcctcaaagtaagc 563

                                                                       
Query: 364 cagacacctctcctcctccaaaccacattgtctgttaaatttttatttgttttaacagag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cagacacctctcctcctccaaaccacattgtctgttaaatttttatttgttttaacagag 623

                                                                       
Query: 424 cattcactgccaaggtcaggggttgcaactaggctgatggcagaccacaggcatgggccc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cattcactgccaaggtcaggggttgcaactaggctgatggcagaccacaggcatgggccc 683

                                                    
Query: 484 tttgttggcaacgatgaggtttcctgatagccaaatgaaga 524
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tttgttggcaacgatgaggtttcctgatagccaaatgaaga 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no417_n17.g1 MSMg01no417_n17.g1 CHROMAT_FILE:
MSMg01no417_n17.g1 PHD_FILE: MSMg01no417_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:52 2005
         (493 letters)



>mm_chr7_81293280_81294172
          Length = 893

 Score =  696 bits (360), Expect = 0.0
 Identities = 372/376 (98%)
 Strand = Plus / Minus

                                                                       
Query: 118 catgcttgagaggtagctgtgagttctacatctggatccacagacagtaggaagagagaa 177
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 catgcttgagaggtagctgcgagttctacatctggatccacagacagtaggaagagagaa 834

                                                                       
Query: 178 acactggcttgagtgtctgaagcctcaaaaccgactcacagtgacacacttccttcaact 237
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 acactgtcttgagtgtctgaagcctcaaaaccgactcacagtgacacacttccttcaact 774

                                                                       
Query: 238 aggccacacctactccgacaaggccagacactgccactacatatgagcttttgaaggcta 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 aggccacacctactccgacaaggccagacactgccactacatatgagcttttgaaggcta 714

                                                                       
Query: 298 ttttcattcaaaccaccacatagttgttcaaatgggagatcaaatgacaaatagtttaat 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ttttcattcaaaccaccacatagttgttcaaatgggagatcaaatgacaaatagtttaat 654

                                                                       
Query: 358 ttctcctagcatgtaattggttaaagagacacagatcaaagcttaagaatcgaaggtctt 417
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 653 ttctcctagcatgtaattggttaaagagacacagatcaaagcttaagaattgaaggcctt 594

                                                                       
Query: 418 cttagggcagttgtcattgctgtgtatgattagtaggcacagccagagaagataaaggaa 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 cttagggcagttgtcattgctgtgtatgattagtaggcacagccagagaagataaaggaa 534

                           
Query: 478 atggcatgaacctctc 493
           ||||||||||||||||
Sbjct: 533 atggcatgaacctctc 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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