BAC Information

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BAC

Clone NameMSMg01-417O05
Chromosome7 (Build37)
Map Location 95,267,742 - 95,447,151
singlet/doubletdoublet
Overlap geneGrm5, Ctsc
Upstream geneLOC621477, Nox4, Tyr
Downstream geneLOC100039756, Rab38, LOC100039924, LOC666598, EG621562, Tmem135, LOC100039969
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417O05.T7 (MSMg01no417_o05.b1)MSMg01-417O05.TJ (MSMg01no417_o05.g1)
ACCAG513361AG513362
length749750
length of high quality
(start - end)
367 (70 - 436)240 (82 - 321)
definitionCHROMAT_FILE: MSMg01no417_o05.b1 PHD_FILE: MSMg01no417_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:55 2005CHROMAT_FILE: MSMg01no417_o05.g1 PHD_FILE: MSMg01no417_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,446,833 - 95,447,151)(95,267,742 - 95,267,981)
sequence
GGGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCACATTTGTCAAACCTGCATGTCAGTGCACAGCAATTATATA
AGCAGTGCTTGAAAAGTTTCAATCAGGTTCACTAGTTCAAAGCACACCAG
ATAAAAATGCAAGGTGAACTGCTTATAAGAACCATACCGCCGGGCGGTGG
TGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTT
CTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCTGG
GCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAATAAAAAATAAAAA
AAGAACCATACCACCTAAATCTACATAAAGACTGAACTCATAAGGGAGGG
CGGGATCAGTTTCCATTCTGGTTAGCACTTTAATAAACAAGCTAACTTTC
CAGTCACATCTACCATGAGTTCTCTGCTACAGGCATTCCTTGCTAGGGCC
ACTTAGTTTGAATGTTTAGTTCATGTGCACTTTTAGTGGCTTTTCCAACT
AACTAAAATGGATTAGAAAATAATACTTATTGATCTCCCTCTTGCAAAAC
TAATAATGCCTGATAATTATTGCTTTGTTTGGTTTCGTATAGCCTATACT
TGAATATTTTTCCTACTTGCCTTTTCATTGATTTGACTTTCCTCCCCTGT
TACACAGAACGGAAAAATATCATTATTTACATTATATATATCCTTATCN
CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCAACCCTGCTGTAGTTGCC
ATGTGAGTTCATGCAAAATGCCCTCCCACCCCAGGAATGACTAAAGCTCA
AAAGTGGATATTATTATCTCCGTGCTCCCTAGGACACAGAGAACACTTGC
TGGAGTCTGTGCTCTGATGTGTTCGTACTTACCCATGAAAGAGAATCATC
ACAGTTACTTGTGTCTGAGAAATGGCTTTATTAGTTAAAAGAAGTACTTG
GATGCATAGTCCCTCACCAGTGTCTATTTTAAAGGAAGGAAGTGTGAGCT
TATTTTATGAAATCATATGGGAATTTAATATTGTTGATATCACAACATTG
GTTTTATGAAGAGCTAACCCTAATCAGTTGAAAAAATGAATTCATCTAGT
ATATATAGATTCGTCAGGGTACTTTACCAGTCTTTAGCATTCTTACCCTT
CCTTATAGTCATGTCTGTAGTTAGCGAGTTCCTTTAAAATGGAAGAAAAA
AATTAAAATGTGTTATGATGACCAGAGCCAAGTTAAATAGGACTATTTCT
TCATTCTAAGTACGTCGGACCTTTTACGATGCCCAGTGTGTGCCACACTG
CGTAGAGTACTTCTTGCTTTTACTCCCCCCCTATAACATTTATAAAAACT
TGCCATATTGAGACCTCCACTCTTTTCACATTCTCCTCCCCCTCCCACCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_o05.b1 MSMg01no417_o05.b1 CHROMAT_FILE:
MSMg01no417_o05.b1 PHD_FILE: MSMg01no417_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:55 2005
         (367 letters)



>mm_chr7_95446833_95447599
          Length = 767

 Score =  601 bits (311), Expect = e-176
 Identities = 317/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacctgcatgtcagtgcacagcaattatataagcagtgcttgaaaagtttcaatcaggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aacctgcatgtcagtgcacagcaattatataagcagtgcttgaaaagtttcaatcaggtt 260

                                                                       
Query: 61  cactagttcaaagcacaccagataaaaatgcaaggtgaactgcttataagaaccataccg 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 259 cactagttcaaagcacaccagataaaaatgcaaggtgaactgcttttaagacccataccg 200

                                                                       
Query: 121 ccgggcggtggtggcacacgcctttaatcccagcacttgggaggcagaggcaggcagatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ccgggcggtggtggcacacgcctttaatcccagcacttgggaggcagaggcaggcagatt 140

                                                                       
Query: 181 tctgagttcgaggccagcctggtctacagagtgagttccaggacagcctgggctatacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 tctgagttcgaggccagcctggtctacagagtgagttccaggacagcctgggctatacag 80

                                                                       
Query: 241 agaaaccctgtctcgaaaaaccaaaaaataaaaaataaaaaaagaaccataccacctaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  agaaaccctgtctcgaaaaaccaaaaaataaaaaataaaaaaagaaccataccacctaaa 20

                              
Query: 301 tctacataaagactgaact 319
           |||||||||||||||||||
Sbjct: 19  tctacataaagactgaact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no417_o05.g1 MSMg01no417_o05.g1 CHROMAT_FILE:
MSMg01no417_o05.g1 PHD_FILE: MSMg01no417_o05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:55 2005
         (240 letters)



>mm_chr7_95267542_95268181
          Length = 640

 Score =  464 bits (240), Expect = e-135
 Identities = 240/240 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaccctgctgtagttgccatgtgagttcatgcaaaatgccctcccaccccaggaatgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaccctgctgtagttgccatgtgagttcatgcaaaatgccctcccaccccaggaatgac 260

                                                                       
Query: 61  taaagctcaaaagtggatattattatctccgtgctccctaggacacagagaacacttgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaagctcaaaagtggatattattatctccgtgctccctaggacacagagaacacttgct 320

                                                                       
Query: 121 ggagtctgtgctctgatgtgttcgtacttacccatgaaagagaatcatcacagttacttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagtctgtgctctgatgtgttcgtacttacccatgaaagagaatcatcacagttacttg 380

                                                                       
Query: 181 tgtctgagaaatggctttattagttaaaagaagtacttggatgcatagtccctcaccagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtctgagaaatggctttattagttaaaagaagtacttggatgcatagtccctcaccagt 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)