Query= MSMg01no417_p18.b1 MSMg01no417_p18.b1 CHROMAT_FILE:
MSMg01no417_p18.b1 PHD_FILE: MSMg01no417_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:03 2005
(541 letters)
>mm_chr7_85531071_85532011
Length = 941
Score = 942 bits (487), Expect = 0.0
Identities = 518/537 (96%), Gaps = 14/537 (2%)
Strand = Plus / Plus
Query: 5 gaattccatcggatgctctctcatgggtagctagaggttggtgagcctctccagtgtact 64
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatcggaagttctctcatgggtagctagaggttggtgagcctctccagtgtact 264
Query: 65 cctcgcctggtccttcttaagcctcgtgtatcacatcatcctcttatttgtcaaagagag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctcgcctggtccttcttaagcctcgtgtatcacatcatcctcttatttgtcaaagagag 324
Query: 125 agagagagagagagagagagagagagagagagagagagagagagagagagagagagaccc 184
||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 agagagagagagagagagagagagagagagagagagagagaga--------------ccc 370
Query: 185 tgatttacagaggaaagtcaactcagccaaaataagctactatcaaggctaagccccgga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgatttacagaggaaagtcaactcagccaaaataagctactatcaaggctaagccccgga 430
Query: 245 acgtacatctcggcctcatgacatttttggataatcccatagcaactaaatcatgtgtag 304
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 431 acgtacatctcggcctcatgacatttttggataagcccatagcaactaaatcatgtgtag 490
Query: 305 aaccgaaagcttgtgacgtagaagcagcaactacctgagcttttgctccctggggacaaa 364
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aaccgaaagcttgtgacatagaagcagcaactacctgagcttttgctccctggggacaaa 550
Query: 365 gaactgcagcttggccttttagcggaaataattctaaaatcaaagtcatgggaagtgaag 424
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 551 gaactgcagcttggccttttagcggaaataattctaagatcaaagtcatgggaagtgaag 610
Query: 425 actaggttgattttatgatccatagtccttaacccaacccaaagcaagacaagatactca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 actaggttgattttatgatccatagtccttaacccaacccaaagcaagacaagatactca 670
Query: 485 gagggaatctcaggcatgtaagagagtgataagcaattggtcaccatagaaaagtgg 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gagggaatctcaggcatgtaagagagtgataagcaattggtcaccatagaaaagtgg 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 76
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_p18.g1 MSMg01no417_p18.g1 CHROMAT_FILE:
MSMg01no417_p18.g1 PHD_FILE: MSMg01no417_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:03 2005
(403 letters)
>mm_chr7_85696866_85697672
Length = 807
Score = 712 bits (368), Expect = 0.0
Identities = 395/406 (97%), Gaps = 4/406 (0%)
Strand = Plus / Minus
Query: 2 gtatctacgactatccccattttgtagatttgcatacacgaagccacacagcaacatcaa 61
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 607 gtatctacgactatccccattttgtagacttgaatacacgaagccacacagcaacatcaa 548
Query: 62 taaaaggaagagaagtcaggcagtctgtatccagaatccatgatgtcacctgcacacttc 121
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 547 taaaaggaagagaagtcaggcagtctgtatccagaatccacgatgtcacctgcacacttc 488
Query: 122 tcactgtcagcccatgttcttgctgtcctcttcaacacctggaccacccaattctggacc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tcactgtcagcccatgttcttgctgtcctcttcaacacctggaccacccaattctggacc 428
Query: 182 ccagctgcgttataatgtggttagattttctaagctggaacaaatgttcccgatgccagt 241
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ccagctgcattataatgtggttagattttctaagctggaacaaatgttcccgatgccagt 368
Query: 242 acaatgagaaattctgctccatgcttcctaggctacattgatttattcacctcggataga 301
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 367 tcaatgagaaattctgctccatgcttcctaggttacattgatttattcacctcggataga 308
Query: 302 ataaccatgtggtgaactagataaaatatttgtaccattgattgctttatttcacacaga 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ataaccatgtggtgaactagataaaatatttgtaccattgattgctttatttcacacaga 248
Query: 362 tggcgggggtt----ggggggaagaggagggcagtgaaaagtgctg 403
||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 247 tggcgggggttgggggggggggagaggagggcagtgaaaagtgctg 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 807
Length adjustment: 9
Effective length of query: 394
Effective length of database: 798
Effective search space: 314412
Effective search space used: 314412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
