BAC Information

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BAC

Clone NameMSMg01-419B19
Chromosome7 (Build37)
Map Location 31,507,891 - 31,508,324
singlet/doubletsinglet
Overlap geneAtp4a
Upstream gene1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075
Downstream geneTmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a, LOC672598, LOC100043323, LOC100043827, Apbh, Abpe, LOC100043326, EG384585, LOC100043328, LOC100043331, LOC626181, LOC100043334, LOC100043834, LOC546947, LOC677233, LOC100043337, LOC546949, LOC100043836, EG626305
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419B19.T7 (MSMg01no419_b19.b1)MSMg01-419B19.TJ (MSMg01no419_b19.g1)
ACCAG514290AG514291
length753798
length of high quality
(start - end)		263 (225 - 487)435 (65 - 499)
definitionCHROMAT_FILE: MSMg01no419_b19.b1 PHD_FILE: MSMg01no419_b19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:31 2005CHROMAT_FILE: MSMg01no419_b19.g1 PHD_FILE: MSMg01no419_b19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTCTATAATTGGGGCGCTATACGACTCCCATATTCTTAGAAACGCGG
GAATTACTTTTTTTCCTGAGAGAAACACCGCAGGGATTTTGATGAGAATG
GGCCTCATAGACTCACACATTTTGGAACATGGGCTCTAGATGGAGACCAC
TGGTTGGCCCTGTTGGAAGAAGTGTGGCACTGGAGGTAACTTTGAAGGTT
CCCAAAAATCCCCTTTCCAAGGGCCTCTGTCTCTGCCTCCTGGTTGAGTC
TCAAGATGTGAGCTCTCGGTGCCACTCCAGTGCCATGTGCCCTGCCCTGA
CGGTCATTGACTCTCTGAATCTCTTAAGCCTCAAATAAACACTTCCTTTT
TACATTCCCTTGGTCACACTGTCTTATAACAGCAATTTAAAAGTAACTAA
ACCACCACAGAGAACAAAACAAATCTCACTGAGCTCAGTAGATGCATGCT
TGTGTGTCCCATCCCTAATATAATGACTTTTTTTTTTCCCGACACAGGGA
CTCTCTGTGAGAGTGACCTCAGAGTCGAGAATCTCTGTTCTCAGACTCCT
AGGAGTACAGTGTGTGCCCCTGTGGCTAGGAATTCAATTTTTATAGAGAC
TCCGAAAAGATCCCAGGCCTCTAAAGGGGAGAAAAAGAACGAACCCGATC
CCTTTTCTTGAAAAAAGCTGTAGGCCTTCCNTGGATTTAATTTGGTAAAA
GGGCCATTCCAAAAAAAAAAAAAGAAAGTCCCCCTGGGCGGAATGGGCCC
AAA

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGTGTGAATGACATTACTAGGAAATTGACAGAAGAG
GGCCATTTGAATTTGAGATGAAGTGGTCTGTCAGGATAGCAAGAGAGTCA
CCTCTGTCTGGAAGCCTCAGAAGCAGAAGATGAAGCCAAGAGTGGTGAGA
AAAAGTGTCCCAGCAACCACCGAGGCAGGGTGGGAGTGCCTGACACTCTA
GCTGGACTGACAACAACGGTGCTTGTCGCTGGGTAGGAGGAAGTGGGAGC
TCACCCATTCCTGTTCTGTATCTGTCTTGAAGATCTTGTAGATGGTGGTC
CTCCCATTGTGGCCGCAGTCCTACACACAACAGAGGGAACCAGCCCTCCT
GCGCCATGGCCGTGAAGTAGTCAGCAAAGCCGGCAAATGACTGAATGGCA
CCTGGGGAAGGTGAGACACAGGCGTGTAGGGACAGAGGTGGAGACAGATA
CTCNAAACCAAGCACACACAGAGCACAGGGACACAGGACAGATATACCAG
AAAGACTCTGACCAAGTGCTTTGCGACCAGAACAGAGAGAAATCCCCGAA
GACCATGACCTTGGCCGGGAAAAACTAGGGCCAAAGTTTTTCCCTCCGAC
CTAAGGTTACCCTGGGAACTCAGGGGATTTGTGTCCGCCAAGCCCCTCAA
ACCCCCCCCGGAGGAGATCCAGCGGAGTGGGCCCCCCCCTCTGGTCTCAG
GGGTTTCACCCTCTGTGAATAAAAAAAAATACTCTGCGTCTCCTTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_b19.g1 MSMg01no419_b19.g1 CHROMAT_FILE:
MSMg01no419_b19.g1 PHD_FILE: MSMg01no419_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:31 2005
         (435 letters)



>mm_chr7_31507691_31508524
          Length = 834

 Score =  764 bits (395), Expect = 0.0
 Identities = 425/435 (97%), Gaps = 1/435 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgtgaatgacattactaggaaattgacagaagagggccatttgaatttgagatgaagt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 634 tgtgtgaatgacattactaggaaattgacagaagagggccatttgaatctgagatgaaat 575

                                                                       
Query: 61  ggtctgtcaggatagcaagagagtcacctctgtctggaagcctcagaagcagaagatgaa 120
           ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 574 ggtctgtcaggatagcaagagagtcacctctatctgaaagcctcagaagcagaagatgaa 515

                                                                       
Query: 121 gccaagagtggtgagaaaaagtgtcccagcaaccaccgaggcagggtgggagtgcctgac 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gctaagagtggtgagaaaaagtgtcccagcaaccaccgaggcagggtgggagtgcctgac 455

                                                                       
Query: 181 actctagctggactgacaacaacggtgcttgtcgctgggtaggaggaagtgggagctcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 actctagctggactgacaacaacggtgcttgtcgctgggtaggaggaagtgggagctcac 395

                                                                       
Query: 241 ccattcctgttctgtatctgtcttgaagatcttgtagatggtggtcctcccattgtggcc 300
           |||||||||  | ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ccattcctg-gccgtagctgtcttgaagatcttgtagatggtggtcctcccattgtggcc 336

                                                                       
Query: 301 gcagtcctacacacaacagagggaaccagccctcctgcgccatggccgtgaagtagtcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gcagtcctacacacaacagagggaaccagccctcctgcgccatggccgtgaagtagtcag 276

                                                                       
Query: 361 caaagccggcaaatgactgaatggcacctggggaaggtgagacacaggcgtgtagggaca 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 275 caaagccggcaaatgactgaatggcacctggggaaggtgagacacaggagtgtagggaca 216

                          
Query: 421 gaggtggagacagat 435
           |||||||||||||||
Sbjct: 215 gaggtggagacagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 834
Length adjustment: 9
Effective length of query: 426
Effective length of database: 825
Effective search space:   351450
Effective search space used:   351450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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