BAC Information

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BAC

Clone NameMSMg01-419C18
Chromosome7 (Build37)
Map Location 87,242,251 - 87,242,398
singlet/doubletsinglet
Overlap geneIdh2
Upstream geneAcan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg, AI854517, Rhcg, 5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710
Downstream geneSema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419C18.T7 (MSMg01no419_c18.b1)MSMg01-419C18.TJ (MSMg01no419_c18.g1)
ACCAG514336AG514337
length750762
length of high quality
(start - end)
302 (215 - 516)152 (321 - 472)
definitionCHROMAT_FILE: MSMg01no419_c18.b1 PHD_FILE: MSMg01no419_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:35 2005CHROMAT_FILE: MSMg01no419_c18.g1 PHD_FILE: MSMg01no419_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTCTAAATTTGTGGCGCTGAAAGAGNCCCACTTTCTTCAAAACCGCG
GGAANNNTNTCTTTCCCACACACTCCGAAAAAANGCTCCCCGGGCACAAC
ACCACAAAGAGTCCTATCCCAAAATACGGGCTCGGACTTGTGTGGGTATA
CACGGGGGGATACCTCTCCCAACAAGCGTGGAACACTAAGGTTAAAGAAC
CACCCCAATTAATAAAAAAAAAAATATTTTAAAAATATAAAAAGTTGGCC
CAGTGGAATGAGTCAAGACCTGTGGACCAGCTAGACACAGCTGGGAAGGC
TGTAGGCCTTCCCAAAAATGTTTTCTTTAGGACAGCAGCCAGATAGGTGT
GTGATAACTAGCTTTATGTCAACCTGACAGAAGCTAGAGTACCCCGGCCC
AGCCCATTCTAGATAATGCCATTACTGGGCTGGTGGTCCTGGGTTCTAGA
AGAAAGCAAACAGAGCGAGCCAGTTTGCAGCACACCACGCTCTCTGCTCC
TGCCTCCAGGTTCCTGCCCTGCTTGAGCTCCTGGCCTCACTGCTTTACTG
GTGATGAACTGTTCTACGGATCTGTGAGTGAAATAAGCCCTTCCCTCCCC
CAGTTGCTTTTGGGCGTCCGTTTCCTCGGAACACAAGAGGCCCCCCAACG
AAATCTCAGGGCGGAAAGCCCCCCAAGGCCCAAACTGTAAAAAAATAATG
AATTGGGACCTTGGGTGGGGGACCGGGAAAAAACAAACCAAGAAAACCTG

TGGGAGGCCTGGNGGNCGCCTGGTTCANAAACTGAGGTGACCTATAGAAG
TTTCCAGAAATTCCATGACTGGAATGACTTTTTTTGTTGTTGTTTTTTCA
AGACAGGTTTTCTCTGTGTAGACCTGGCTATCCTGGAACTCATTCTGTAG
ACCATGCTGGCCCCACACTCATAGGAGCCGCCTGCCTCTGCCTCCTGAGT
GCTGGGATTAAAAGCATGCATCACTATCCAGCGATTTTTTTTTTTTATTA
AAAGATTCCAGTATGATTGTGTAAGCACAAGGGTTACGTGAAAGAGAGGC
TCTGGGTTAGATAGATTTTAACACCCAAGAGCGTGGGCATGAACTCAGAG
TCTTCTGCAAGTGTGTGTGTGTGAGATCCCTTATGGAGGCCAGAAGTTGA
TGCCCCACGCCTTCTATTATGCTCCATTATTATATTAATGTATAATAATA
ATCTACATTATTGACTTTAGCATATAAGGCCAAGCATGGTAGCATTATTA
AGAGAGGCAGCCGGATTTCTGCGCGTTTGAGGGCATACCCAGCTTTAATG
GTACCCGACTTACCTACAACACCCCCCTCTACCAGAATTTTAGCGCATTA
TTTATTTTTTTCTGGCCACCCAGCCCCACTGGGGCATTAAAAAAATCTTT
TTTTTTTTTTTTATGCGACGGACCATACCTAACGCTTTTTTTCACACGTC
TTCTACTTTCCCTCTCTGCATCTCTTGTGTTTTTCTTTTTCTTCCTCACT
TTTTCTTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_c18.g1 MSMg01no419_c18.g1 CHROMAT_FILE:
MSMg01no419_c18.g1 PHD_FILE: MSMg01no419_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:35 2005
         (152 letters)



>mm_chr7_87242051_87242600
          Length = 550

 Score =  232 bits (120), Expect = 7e-66
 Identities = 142/150 (94%), Gaps = 2/150 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacccaagagcgtgggcatgaactcagagtcttctgcaagtgtgtgtgtgtgagatccc 60
           ||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||
Sbjct: 348 acacccaagagcgtgggcatgaactcagagtcttctggaa--gtgtgtgtgtgagatccc 291

                                                                       
Query: 61  ttatggaggccagaagttgatgccccacgccttctattatgctccattattatattaatg 120
           |||||||||||||||||||||| |  | ||||||||||||||||||||||||||||||||
Sbjct: 290 ttatggaggccagaagttgatgtcagatgccttctattatgctccattattatattaatg 231

                                         
Query: 121 tataataataatctacattattgactttag 150
           ||||||||||||||||||||||| ||||||
Sbjct: 230 tataataataatctacattattggctttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 550
Length adjustment: 8
Effective length of query: 144
Effective length of database: 542
Effective search space:    78048
Effective search space used:    78048
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)