BAC Information

Click to search

BAC

Clone NameMSMg01-419D19
Chromosome7 (Build37)
Map Location 139,336,675 - 139,337,116
singlet/doubletsinglet
Overlap geneCpxm2
Upstream gene5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679, Gpr26
Downstream gene4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419D19.T7 (MSMg01no419_d19.b1)MSMg01-419D19.TJ (MSMg01no419_d19.g1)
ACCAG514386AG514387
length892784
length of high quality
(start - end)
---447 (61 - 507)
definitionCHROMAT_FILE: MSMg01no419_d19.b1 PHD_FILE: MSMg01no419_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:41 2005CHROMAT_FILE: MSMg01no419_d19.g1 PHD_FILE: MSMg01no419_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCACTTTAAATCGATGTGTCCGAGTTCGTTTTCCACACCACGTGCGAAG
GCGGGCCCTTTCCCTACACTCCTATCACAGCTTTTCATTTTTTCTTANAT
ACCCCTCCCTCGCCTACTCGGTCTCCTTTTTTACTCTCCCCTTNNCCCCC
TTCCCNCCCGTCCCTTTTTTCCTACTTCGNGCTATTTCACCTTCTTTCGC
CATATGCAAGTCCACATCCGACTGTGTCACCGCAAAAACTGTATTTTGCN
CACAGTGAGAAAAGGAACCAGCTTGTTGGATTTTTTTTTTTCTTAGCTTA
AGAAACAGAGGGGAAAAGGCGCACAGAACCAAAGGTTCNCNCAGGAAAAG
AGAGACACCCACCNTGAAAAAGGGGGGGAGAGATGAGGGAGTAACATGGT
CCGTTGTCAGAAGAAAGGCGCCAAAGGAAAGCTAGAATTGNNTCCCCCCT
CCCTCCTGTGGAGTATAGCGATGATACCTCTTGCCGTTTCTACCCCTCTT
TTCTAATTTTATTTGTTTTGTACTCTTATGCTACAGCCCTTCTCTGTCCT
GCTTGCTGAATTATTTATCCTTNTCNNNAATGAGGGAGGGTCTTGAGAAA
AGAGCGGNTTTGCTATATTAGAGGGCGTCTGGTTGAGCGGCCCCCTTTTA
TTTTCGTGGCCTCCTCATNCCTCCTGCCCNCACTAGTGGCGGCGCGGTTT
TNCGCNNCNNNCCNNNNNNNNNNNNNNNNNAAGGTAGCGGTTNAAAGGGG
TNNGNNNNNNNNNNNNNNNNAAGGNNNCAAGGTAGGNTAAACTGGCNGNN
NNNGTGGCGGAAGAGTTAGGGGTNNGNNNGGCNNCCAGAGCAGGGGAATG
AGAAATGNCTNNTCTTTGGTTGGGCGGGTTTGCGGCGTGTGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGTGTTGTCACGCGGCCCAGATGGAGATGCTGATTTGATT
CTGGCTCCTTCTCTGAACGCTATTTCCACTTCTCTTTCTTCTTTCATCTG
TACGGAGCATATGGTGTCTTTCTCGTTCTGGGGGCAGGAGGTCTATGTAA
GAGGCCTTTGTGCTGGCAGGGAAGGCCCCTTGGAGCTGGTCTCTAGCACT
GTTACCTCCTGGCTGTCAGTGACCTTGGGAAGCCCTCTTCCTCACAATAG
GTCATCAATTCTTATTCTGTGGGTTGAGACCTTTCTGGGGGTATGTCACA
CATGAGATATTTACACTAGGATGCATAACAGTAGAAAGATTACAGTTATG
AAGCACCAAAAGAAATAACTTTACGATGGGGGGGGGAGTCACCACTACAT
GTATTAAAGGGTCACAGTGCTAGGAAGGTTGAGAACCACTAACCTAGGCC
TTCATGTTTCCAACTGTAAAATGTCTTTCCTATTCTCAGAGAGTTGAACC
TTGCAGTGAACATGTCTTATACATTTTGGAGCCCCTTGACCCTGGAAGCT
TTAGCAATTGGGGTAGCGGTAATGATGTGTATGCCCCCCCGATAACGGTG
GTTTATTTTTTTTGTTCGAATTGTCTTTTGTCCCCTTGGGGGTTCCTACG
TCACATTTTGTGTCCTTTTTGCCCCTTCTCCTGTGTGTTTGTTTTGTTGC
TTTTCTTTTTGGTGTTTGCTTTTTCACCTAATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_d19.g1 MSMg01no419_d19.g1 CHROMAT_FILE:
MSMg01no419_d19.g1 PHD_FILE: MSMg01no419_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:41 2005
         (447 letters)



>mm_chr7_139336675_139337521
          Length = 847

 Score =  801 bits (414), Expect = 0.0
 Identities = 435/442 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgttgtcacgcggcccagatggagatgctgatttgattctggctccttctctgaacgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 442 tgtgttgtcacgcggcccagatggagatgctgatttgattctggctccttctctgaacgg 383

                                                                       
Query: 61  tatttccacttctctttcttctttcatctgtacggagcatatggtgtctttctcgttctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tatttccacttctctttcttctttcatctgtacggagcatatggtgtctttctcgttctg 323

                                                                       
Query: 121 ggggcaggaggtctatgtaagaggcctttgtgctggcagggaaggccccttggagctggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggggcaggaggtctatgtaagaggcctttgtgctggcagggaaggccccttggagctggt 263

                                                                       
Query: 181 ctctagcactgttacctcctggctgtcagtgaccttgggaagccctcttcctcacaatag 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cactagcactgttacctcctggctgtcagtgaccttgggaagccctcttcctcacaatag 203

                                                                       
Query: 241 gtcatcaattcttattctgtgggttgagacctttctgggggtatgtcacacatgagatat 300
           |||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gtcatcaattctcaacctgtgggttgagacctttctgggggtatgtcacacatgagatat 143

                                                                       
Query: 301 ttacactaggatgcataacagtagaaagattacagttatgaagcaccaaaagaaataact 360
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 142 ttacactaggatgcataacagtagaaagattacagttatgaagtagcaaaagaaataact 83

                                                                       
Query: 361 ttacgatgggggggggagtcaccactacatgtattaaagggtcacagtgctaggaaggtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  ttacgatgggggggggagtcaccactacatgtattaaagggtcacagtgctaggaaggtt 23

                                 
Query: 421 gagaaccactaacctaggcctt 442
           ||||||||||||||||||||||
Sbjct: 22  gagaaccactaacctaggcctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)