BAC Information

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BAC

Clone NameMSMg01-419G01
Chromosome7 (Build37)
Map Location 77,739,883 - 77,740,006
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665410, Nr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419G01.T7 (MSMg01no419_g01.b1)MSMg01-419G01.TJ (MSMg01no419_g01.g1)
ACCAG514493AG514494
length740739
length of high quality
(start - end)
---124 (121 - 244)
definitionCHROMAT_FILE: MSMg01no419_g01.b1 PHD_FILE: MSMg01no419_g01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:54 2005CHROMAT_FILE: MSMg01no419_g01.g1 PHD_FILE: MSMg01no419_g01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCTTCTTCTATAAATTGCGGCCGCTAAACGAACTCACTTTCAAAGAG
GAGCCGCGGAATTCCAAGTATCGATATACGCTGCTTTAAAACATTTCCTC
TATTCGCTTTAAATTTGTTGCCTTTCACCGCCGCAGTGTGGCCGGCGCTC
TGGCCTTAAGTGGAACAGGTTAAAGGGAGAGCTGCACGTCTCCCCAGCAC
TTTCTCCGTCCTCTCTCAGGAATTTCTGGCTTGGCACTTAATACCCTGAC
TTATCTATATGATTTGACTAAGTGGTTTTATGCTACCTGCGACACAGAGA
AGGTATCGGCCCAAAATTTTTTTTTTATACTCAGNGTGATTTATTAGATA
ACTATTTACCCTCCACCTATTTGAGTAGGAACTGCTTCAGTTTTGGAGAG
ATAGCTTTGAATAAGACTAGGTCATTGTTCAGTAGGACCTGAATTTTCCT
GGTAGGAAATGTGCAGCACCGCGCGTGTTAATTATTAGGTGCCCATTAAG
CGGCTAAATAGATCTATCCTATTTCCACACCCCTCTTAGTCTACTTTATT
TGCCCCTGCCCTCTTTGTTGTTCCCCCCCCCCCCATAACCTGCGTCTATA
TTATCCACCTACCCCCCCCTCTTTATTTTACCCTCACCTCTCCCCCTGTT
CCTTTGTTTTATTTCCCCTTTGCCTCTTTTTCTCTGTTGTAAAAATCCCC
CTCCCCTACTTTCGCCCCCTTGTATTTATTATTCCGTCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAAGCTGANGNNGAACNAN
ACAAGGTAGCGTGACCCGCCAGGNCNNACCCAGAAACCAGNCAAGNAAAA
TGGAACTTGTTTTTACCCCCAAGCCACCTTTGCTCCATTTGGATTAAGAG
AAAAGTATTTCTGTGCCAAGGAAAGGTTTAAAATAATGGAGCAGCAGGAA
TATGGACCGGGAGGGGCCAATAATGAATCTGCAAATCATTATTGATTTTT
CTTCCAACTGAAAATTGCTTTGCAACCCAAGAAAATCTTGTGACCCACAG
CTCCCTTCTTTTTTTTTTTTTTAGAAGGANCGAACCCAANGAGCAAGGAG
CAGGATTTTTTCTCTCCCACCGCCCCGAGAGGAGTCCTAAATATTCACCC
GCAGGCTTTGACCCGCGAAAAAAATAAAAAGGGTTCGCTTCAGAGACATA
TTCTCCTGAATGATAAAGCCAAGGCCCTATATGTATCGGTACCTCCATCC
AATGAATAATATTTATTTTACTACCTTTTCTTTTCACTTTTAATCCCATT
TTTATCGCGATGTTGCTCTTTTTTACGGTCTCCTTTTTACCGGGTTTCAT
CATGAATTATCCTTCACTTTTTTTCCACTATTACTATTTCCTTTTTTTTT
TTTTTTTTTATACGTTGAACTCAGTCTCGCTTTACTTTTTGCACATATAT
ACGTATAAGACCTTCTACGCTATTCACTCCTCCTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_g01.g1 MSMg01no419_g01.g1 CHROMAT_FILE:
MSMg01no419_g01.g1 PHD_FILE: MSMg01no419_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:54 2005
         (124 letters)



>mm_chr7_77739683_77740206
          Length = 524

 Score =  232 bits (120), Expect = 5e-66
 Identities = 123/124 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagccacctttgctccatttggattaagagaaaagtatttctgtgccaaggaaaggttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagccacctttgctccatttggattaagagaaaagtatttctgtgccaaggaaaggttta 265

                                                                       
Query: 61  aaataatggagcagcaggaatatggaccgggaggggccaataatgaatctgcaaatcatt 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 264 aaataatggagcagcaggaatatggaccgggaagggccaataatgaatctgcaaatcatt 205

               
Query: 121 attg 124
           ||||
Sbjct: 204 attg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)