BAC Information

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BAC

Clone NameMSMg01-419M16
Chromosome7 (Build37)
Map Location 128,662,545 - 128,662,749
singlet/doubletsinglet
Overlap genenone
Upstream geneAbca16, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa, LOC668556, Hs3st2
Downstream geneUsp31, Scnn1g, Scnn1b, Cog7, Gga2, Ears2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2, 2010110P09Rik, Prkcb1, LOC668486
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419M16.T7 (MSMg01no419_m16.b1)MSMg01-419M16.TJ (MSMg01no419_m16.g1)
ACCAG514809AG514810
length765781
length of high quality
(start - end)
351 (130 - 480)233 (65 - 297)
definitionCHROMAT_FILE: MSMg01no419_m16.b1 PHD_FILE: MSMg01no419_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:26 2005CHROMAT_FILE: MSMg01no419_m16.g1 PHD_FILE: MSMg01no419_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTTTCTTAAATTGTGGGGGGTAAAGGGGNNNCAATTCCCCAAAGAGC
GGGGAANNCCGGGTCTCCCCCAAAACCGGGANAAAGGCATCCAACGGCAA
ACCAGAAGCCAACATCAAAGTAAAGGGAGAGAAGCTGGAAGCAATCCCAC
TAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAAC
ATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAA
GGGGATATAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATG
ATATGATAGTATATATAAGTGACTCTAAAAATTCTACCAGAGAACTCCTA
AACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAA
CAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAA
TTATGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTT
GGCGTGACTCTAACTAAGGAAGTGAAAGACTGTATGATAAAAACTTCAAT
CTCTGGAAGAAGAAATTATGGAAGATCTCCAAAAATGGAAGGAACTCCCT
GGCCCGGGATGGCAGGGACAAATTGGTAAATGGGTATTTTTGCCCAACCA
TTCCACAATTCAAGGGCACCCCCCTCAAATTCCACCTCAATCTCCCATCA
ATGGAAAGGGCCATTTGGTATTTTCTTGGGGCACCAAAACCCTCTGTATG
TTAAAACCCTCCCAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGGGAGGCTGTTAAGCTGACTGGAGTCAGACTGATG
GAAACCCTGCACACTGCATCAGGGGGAGCAAGTCCCCTGAAAGATAAGCT
TCCAGGAAACAAGAAAGCACTGGGAAAAGGTGAGCTGCCAATACAGCCTT
CAGAACAGTGAAGGAAGCTCTTCTAACAGGGTTTCTTTTTTATATATTTA
CATATATATATTATATAATGTGTGTGTGTGTGTGTGTGTGTGTGNNNNNN
NNNNNTTTTTTTTTNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTT
TTTCCCCCCCCCTCTTCTTTNCCTTTTTTTCTTTTTCTCCTCTTCCTCCC
CCCCCCCCCCTTTTTTTTTTTTTTCCCTTCTTTCTCTCCTCTCCCTTCTC
TTTTTCCTTCTTCTCCCTCCTTTCCCCTTCCCTCTTTTTTTCCCTTTTTT
CTTTCTCCCTTTTTCTCCTTTTTCCTCCCCCTTCTTTTTTCTTTCTCCTT
CCTTTTTTTTTTTCTCTCTTCCTTCCTCTTCTCTCCCTTTTTTCCCCTTC
TTTCCCCCTTTTTCCTCTTCTTTCTTTCCCCTTTTTCTTCTTTTCTTTCT
CTCCCCTCTTTTTTTTTTTTTTTCTCNNCCTTCCCCTTCTTCCTTTCCCT
CTCCTTCCCCTCTTCTCCTCCCTTTCCTCTCTTTTTCTTTCCTCTCTTTT
TCTTCTTCCCCCTCCTTTTTTTTTCCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_m16.g1 MSMg01no419_m16.g1 CHROMAT_FILE:
MSMg01no419_m16.g1 PHD_FILE: MSMg01no419_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:26 2005
         (233 letters)



>mm_chr7_128662345_128662977
          Length = 633

 Score =  317 bits (164), Expect = 3e-91
 Identities = 203/230 (88%), Gaps = 25/230 (10%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggaggctgttaagctgactggagtcagactgatggaaaccctgcacactgcatcaggg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tgggaggctgttaagctgactggagtcagactgatggaaaccctacacactgcatcaggg 260

                                                                       
Query: 61  ggagcaagtcccctgaaagataagcttccaggaaacaagaaagcactgggaaaaggtgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagcaagtcccctgaaagataagcttccaggaaacaagaaagcactgggaaaaggtgag 320

                                                                       
Query: 121 ctgccaatacagccttcagaacagtgaaggaagctcttctaacagggtttcttttttata 180
           ||||||||||||||||||||||||||||||||||      ||    ||            
Sbjct: 321 ctgccaatacagccttcagaacagtgaaggaagc------aa----gt------------ 358

                                                             
Query: 181 tatttacatatatatattatataatgtgtgtgtgtgtgtgtgtgtgtgtg 230
            ||||||||||||||  |||||| ||||||||||||||||||||||||||
Sbjct: 359 -atttacatatatat--tatatagtgtgtgtgtgtgtgtgtgtgtgtgtg 405


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)