Query= MSMg01no420_a02.b1 MSMg01no420_a02.b1 CHROMAT_FILE:
MSMg01no420_a02.b1 PHD_FILE: MSMg01no420_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:42 2005
(319 letters)
>mm_chr7_147154247_147154965
Length = 719
Score = 528 bits (273), Expect = e-154
Identities = 279/281 (99%), Gaps = 1/281 (0%)
Strand = Plus / Minus
Query: 38 cacctcccacacctggggcagagacacctgatctcctcaaatgtaagtggaggaggttgc 97
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 446 cacctcccacacctggggcagagacacctgatctcctcaaacgtaagtggaggaggttgc 387
Query: 98 tgggggatccccctgcagcacacccaggaagtgaagactgacctgacgctgtggctgggt 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgggggatccccctgcagcacacccaggaagtgaagactgacctgacgctgtggctgggt 327
Query: 158 tttacccttgctctctgcggctgcttgtggaaatacccaggttcagccccagttcagaga 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tttacccttgctctctgcggctgcttgtggaaatacccaggttcagccccagttcagaga 267
Query: 218 aactagagactttctggtgagttacaaagtgttgtgttttataaaaaaatataagaagga 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aactagagactttctggtgagttacaaagtgttgtgttttataaaaaaatataagaagga 207
Query: 278 atatgtttggtggtggtgtagtaagctggtgggggaagggg 318
|||||||||||||||||||||||||||| ||||||||||||
Sbjct: 206 atatgtttggtggtggtgtagtaagctg-tgggggaagggg 167
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no420_a02.g1 MSMg01no420_a02.g1 CHROMAT_FILE:
MSMg01no420_a02.g1 PHD_FILE: MSMg01no420_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:43 2005
(486 letters)
>mm_chr7_146965270_146966158
Length = 889
Score = 882 bits (456), Expect = 0.0
Identities = 480/490 (97%), Gaps = 5/490 (1%)
Strand = Plus / Plus
Query: 1 taggtgatcctgtaaccactcaacctgagtaagaagtaaggtgggggggggggctgatga 60
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 201 taggtgatcctgtaaccactcaacctgagtaagaagtaaggtgggggagggg-ctgatga 259
Query: 61 cctaaccaaggactcttgtgtctggtgctaaagagtcaaggctatgattatcacgatcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cctaaccaaggactcttgtgtctggtgctaaagagtcaaggctatgattatcacgatcag 319
Query: 121 tacacccac----aaacttctatttgcatgtgaggtgtactgattggtgcaaacacaaac 176
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tacacccacccacaaacttctatttgcatgtgaggtgtactgattggtgcaaacacaaac 379
Query: 177 cttcatttgcattcaaaggtgtgctgtgattggtccaaaaccttctttagcttatataag 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttcatttgcattcaaaggtgtgctgtgattggtccaaaaccttctttagcttatataag 439
Query: 237 caagatgctgggactcacttactgagctggcaggagatgctctcctgtgcttcctccctt 296
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caagatgctgggactcactcactgagctggcaggagatgctctcctgtgcttcctccctt 499
Query: 297 ggtgttgcaacatacatccctataaaaggcccctctctagtgatagactgatggcctgca 356
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 500 ggtgttgcaacatacatccctataaaaggctcctctctagtgatagactgatggcctgca 559
Query: 357 tgggaaaagctcatttcaagcctgggttcacttggactccctctgtatctggaaagcttt 416
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgggaaaagctcacttcaagcctgggttcacttggactccctctgtatctggaaagcttt 619
Query: 417 ctagagatactttccactttctcctgcttgatgccaggactcctcagagctcttggctcc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctagagatactttccactttctcctgcttgatgccaggactcctcagagctcttggctcc 679
Query: 477 ggaattcaca 486
||||| ||||
Sbjct: 680 ggaatccaca 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 889
Length adjustment: 10
Effective length of query: 476
Effective length of database: 879
Effective search space: 418404
Effective search space used: 418404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
