BAC Information

Click to search

BAC

Clone NameMSMg01-420I20
Chromosome7 (Build37)
Map Location 135,364,352 - 135,364,918
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2
Downstream geneLOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420I20.T7 (MSMg01no420_i20.b1)MSMg01-420I20.TJ (MSMg01no420_i20.g1)
ACCAG515391AG515392
length790764
length of high quality
(start - end)		---566 (63 - 628)
definitionCHROMAT_FILE: MSMg01no420_i20.b1 PHD_FILE: MSMg01no420_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:26 2005CHROMAT_FILE: MSMg01no420_i20.g1 PHD_FILE: MSMg01no420_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAATCTACATATTGCGCCGCTGATAGAGGNNCATAGTTTCTCACGGAG
CGGGANANTGGNGATTTTACANCACTAGCGGGCNNCCACGACNGGGGAAG
ANGCCACCAGCGGNAAAAGAACGGGAAGACCGAAGCAGCCACNAAACAAA
NTCTAAGCAGAGNAACGGCCGGGGGNGGCCCCCCCCCCGGGAGGGACGCC
CCACAAACCCCCCCACCAAAAAGAAACCCGGGCGGGGGCCCCCCCCCCCC
CCCGGGGGGAGAGGGGGGGGGGCNCACCCCCAACGGGGGGGGGGGCCCCC
CCCAGGGAGGGGNAAAAAAAAACACCCGCCGGGCGGAAAAAGAAGACCCC
CCCACCAAAAAAAAAAAAAAAAATTTTCTTTCTCCCGGGGGGGGGGGGGG
TGGGGGGCGCCCCCCCCCAACAAAAAAAGAGGGGGGGGGGGGGGAATGGT
AAAAAAAAAAAAAAACAGGGGGGGGGGGGGGGGGGGGCGGGTTTCCCGCA
GGGGAAAAACCCAAAAACCACACAAAAGGGTTTTTTTTTTTTTTTTTTCC
CAACAAAAAAAAGAGGGGAGGGGGCCGCGCCCCCCCCCTCTCTGTGGGGG
GGGGGGGGGGGCGCCCCCCCCCCCCCCAATGAATTTTTTTTTGCTCCCCC
CCCCCCCGCCCGGAAAAAAAAAAAAAAAAAAAAAACAGTGGATGGAGGTG
GGCGCGACACCCCCCCCCCCCTTTTTTTTTTTTTTGTGGGGAAGGGGAAG
GCGGCGAAAGTCAGCGCTTCCCCCCCCCCACAACAAAAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCCGGCTCAGACACAACCCAGCTCTTGAATTAGCACA
CAGCTGTAGCCTCTTCCTATTGTTTAAATAGGCCCAGCCCGATCAGAACT
GTTTCATAGTTTATGCAGAATTAGACATTGCCATAATCTCATCCACGTGG
CCATTGGCCATCCTAAGGCAATCTTTTTATCCCATCCAAGGGAGATTTTT
TTTCCCTTGAGCTAAGCAAGTTTTGCAGAAGCTGAAATGTGCAGGTTTCT
AGTTAAGGCATTTTTATATTTAGCAAACAGAACTTGCTGTCTATGCTCTT
TTCCAGAAAAAGAAGGCACACACAGCAGGTTTAGAAAAGCAGGCATCAGT
CATTCGGTTTCGGCTCTGTTGTCCCAGCTCAGACATAGTTACTGTCTTCT
GACTCTGATGCAACCCAGTATTTCCTTAGTAAGCTCATCATGTTTGATTA
GTGTTAAAGCTTGCTATTTTCCTTCTGCTCTTCACACACACTGTTCTCTC
TGAGCCACCACAACCATCCCTTCTTATAAACCCTGTCGCCCGCCTAGCCC
AGGCTTTATTTTTCTTACCTCTAGATTACAGTCTGTTTTCTACATAGCCT
TTATTGGTGGTAGGGTAGAGGTACGGTGGGATGGGGTTGTTTCTNTTNTT
CTCTTNTCTTCTTCNTTTTTCNTCNTCCTCTCTCCTATCTCTTTTCCCCT
TTTTTCTCCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_i20.g1 MSMg01no420_i20.g1 CHROMAT_FILE:
MSMg01no420_i20.g1 PHD_FILE: MSMg01no420_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:26 2005
         (566 letters)



>mm_chr7_135364152_135365118
          Length = 967

 Score = 1065 bits (551), Expect = 0.0
 Identities = 563/567 (99%), Gaps = 1/567 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccggctcagacacaacccagctcttgaattagcacacagctgtagcctcttcctattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccggctcagacacaacccagctcttgaattagcacacagctgtagcctcttcctattg 260

                                                                       
Query: 61  tttaaataggcccagcccgatcagaactgtttcatagtttatgcagaattagacattgcc 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaaataggcccagccctatcagaactgtttcatagtttatgcagaattagacattgcc 320

                                                                       
Query: 121 ataatctcatccacgtggccattggccatcctaaggcaatctttttatcccatccaaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataatctcatccacgtggccattggccatcctaaggcaatctttttatcccatccaaggg 380

                                                                       
Query: 181 agatttttttt-cccttgagctaagcaagttttgcagaagctgaaatgtgcaggtttcta 239
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatttttttttcccttgagctaagcaagttttgcagaagctgaaatgtgcaggtttcta 440

                                                                       
Query: 240 gttaaggcatttttatatttagcaaacagaacttgctgtctatgctcttttccagaaaaa 299
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttaaggcagttttatatttagcaaacagaacttgctgtctatgctcttttccagaaaaa 500

                                                                       
Query: 300 gaaggcacacacagcaggtttagaaaagcaggcatcagtcattcggtttcggctctgttg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaggcacacacagcaggtttagaaaagcaggcatcagtcattcggtttcggctctgttg 560

                                                                       
Query: 360 tcccagctcagacatagttactgtcttctgactctgatgcaacccagtatttccttagta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcccagctcagacatagttactgtcttctgactctgatgcaacccagtatttccttagta 620

                                                                       
Query: 420 agctcatcatgtttgattagtgttaaagcttgctattttccttctgctcttcacacacac 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agctcatcatgtttgattagtgttaaagcttgctattttccttctgctcttcacacacac 680

                                                                       
Query: 480 tgttctctctgagccaccacaaccatcccttcttataaaccctgtcgcccgcctagccca 539
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgttctttctgagccaccacaaccatcccttcttataaaccctgtcgcccgcctagccca 740

                                      
Query: 540 ggctttatttttcttacctctagatta 566
           |||||||||||||||||||||||||||
Sbjct: 741 ggctttatttttcttacctctagatta 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 967
Length adjustment: 10
Effective length of query: 556
Effective length of database: 957
Effective search space:   532092
Effective search space used:   532092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |