BAC Information

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BAC

Clone NameMSMg01-420J11
Chromosome7 (Build37)
Map Location 105,495,485 - 105,495,972
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca
Downstream geneTsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir, Wnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420J11.T7 (MSMg01no420_j11.b1)MSMg01-420J11.TJ (MSMg01no420_j11.g1)
ACCAG515421AG515422
length691749
length of high quality
(start - end)		---435 (75 - 509)
definitionCHROMAT_FILE: MSMg01no420_j11.b1 PHD_FILE: MSMg01no420_j11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:29 2005CHROMAT_FILE: MSMg01no420_j11.g1 PHD_FILE: MSMg01no420_j11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAGTTAAGCGGAGGGGNTTNTGGGGTGGGGGGNTCTTTTTCATAAAAAAA
ATAGGGGGGGGGCGGGCGTAAAAAAGGAGANGNCCCCNNNTTNCGGTCAT
TCCCAAAGAAGNAGGGGGNGGNGNGGNANAAANNNNNNNNNNNNNNNNNT
TTTTTTTTTTTCTAACAAAAAAAGAAGGGGGGGGGNNNNAAAAACCCCCG
CGAGGGGGAGGGCCCCCCAAATAAAAGCCCCCTGAAAAAAAGGNTNTNTT
TTTAAAACCCTTCCAAAATTTTAGGGCGGCCGCCCCCCCCCCCCCAAAAA
AAAAGGGGAAAAAAAAAAGAAAGGGGGGGGGGGGGCAAAAAAAAAAAGGG
GGGGAAAAAGCCCCCTTTTTTTTAAAAAAAAAAAAGAGGGGGGGGGGGGG
GGGACCCTCCCCCCCCCCCCCCCCCCCCCCGCCCGGAAAGAGGAGGAGGA
AAAAAAATTTTTTTTTTTTTTTTGGGGGGGGTGGGGGGCGGGAGGTCCGC
GGTTCCGGGCCGGGGGGGGAGGGGGGCCTGGGTTGGGCCGGGTTTGGGGC
TAGGNTGGGGGGGNAGGGGGGGGGACCCAGGGGGTCACGGGNAGGAGGAG
GCAGGGGNGGGGGGTTTTTTTTTGGTGGTTTTTTCNNCNCNNNNNTTATC
CTTTTTTTAAAAAAAAAAAAGGGGGGGGGGGGCCCCGCCCC

CATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTCCCTCAAAGTGGGACTTTCGAC
CCTTCATTTAGCACGAGAGTCGAGCCCTCGTGTATCACCTGGCTTATTTA
TTGCTTCTAACAATCAATTAATTAGAAAATCGTTCTTAGCTTGATCTTTC
AAGCCTCTGACCAATATCTCTTCTTCTGTGTCTTCCCATATCAATGTACA
CGATTATCATATGTGTAGTAGACACACACACACACACACACACGTATATA
CACCAAGAAACATGATCTACTCTGATCTTCCCAGTTTGAAACATTTTGCC
TAAGGAGTATGTGACTTAAAATGGCAAATGGTGTCAGTAATTAAAGAATA
AACACAGGAGGAAATCCCCTCCACGCTCGGTAAACACAATAATCCCCCAA
ATACTGTCTGTGGTACTTAAATAAACAAAAGGTAAGATAAGAAAAAGAGA
AAACCAACAGGGGCGTGTGGCTTAGCTGAATGGCCATGCTCCTGTATCTG
GAAGGTACGTTGAGGATGGATATTAAATGCTGAGCTCAGAGCACAGTATT
GATTGTTACCTGGGACACTGACTGTGCAGCAGTGGACGGTAAACATGGGC
CGGGACTGGGAACCTTCCCTTTGTGGATACTGGCCATGATTCCTTACTGA
TCGGAAAAAACTCTTGGCCCCCTACGTGAAGTTATTTTACAAAGGAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_j11.g1 MSMg01no420_j11.g1 CHROMAT_FILE:
MSMg01no420_j11.g1 PHD_FILE: MSMg01no420_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:29 2005
         (435 letters)



>mm_chr7_105495337_105496172
          Length = 836

 Score =  669 bits (346), Expect = 0.0
 Identities = 427/488 (87%), Gaps = 53/488 (10%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttccctcaaagtgggactttcgacccttcatttagcacgagagtcgagccctcgtgta 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||
Sbjct: 149 ttttccctcaaagtgggactttccacccttcatttagcacgagagtcgagcccttatgta 208

                                                                       
Query: 61  tcacctggcttatttattgcttctaacaatcaattaattagaaaatcgttcttagcttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tcacctggcttatttattgcttctaacaatcaattaattagaaaatcgttcttagcttga 268

                                                                       
Query: 121 tctttcaagcctctgaccaatatctcttcttctgtgtcttcccatatcaatgtacacgat 180
           ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 269 tctttcaagcctctgaccaatatctcttcttctgtgttttcccgtatcaatgtacacgat 328

                                                                       
Query: 181 tatcatatgtgtagtaga------------------------------------------ 198
           ||||||||||||||||||                                          
Sbjct: 329 tatcatatgtgtagtagatacacacacacacacacacatacacacacaaacacacacaca 388

                                                                       
Query: 199 ----------cacacacacacacacacacacgtatatacaccaagaaacatgatctactc 248
                     ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 389 cacacacacacacacacacacacacacacacgtatatacaccaagaaacatgacctactc 448

                                                                       
Query: 249 tgatcttcccagtttgaaacattttgcctaaggagtatgtgacttaaaatggcaaatggt 308
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 449 tgatcttcccagtttgaaacattttgcctaaggagtgtgtgacttaaaatggcaaatggt 508

                                                                       
Query: 309 gtcagtaattaaagaataaacacaggaggaaatcccctccacgctcggtaaacacaataa 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gtcagtaattaaagaataaacacaggaggaaatcccctccacgctcggtaaacacaataa 568

                                                                       
Query: 369 tcccccaaatactgtctgtggtacttaaataaacaaaaggtaagataagaaaaagagaaa 428
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tcccccaaatacagtctgtggtacttaaataaacaaaaggtaagataagaaaaagagaaa 628

                   
Query: 429 a-ccaaca 435
           | ||||||
Sbjct: 629 aaccaaca 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 836
Length adjustment: 9
Effective length of query: 426
Effective length of database: 827
Effective search space:   352302
Effective search space used:   352302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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