BAC Information

Click to search

BAC

Clone NameMSMg01-420J12
Chromosome7 (Build37)
Map Location 109,834,648 - 109,834,893
singlet/doubletsinglet
Overlap geneTrim68
Upstream geneClpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556
Downstream geneOlfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420J12.T7 (MSMg01no420_j12.b1)MSMg01-420J12.TJ (MSMg01no420_j12.g1)
ACCAG515423AG515424
length707737
length of high quality
(start - end)		---246 (69 - 314)
definitionCHROMAT_FILE: MSMg01no420_j12.b1 PHD_FILE: MSMg01no420_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:29 2005CHROMAT_FILE: MSMg01no420_j12.g1 PHD_FILE: MSMg01no420_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACCAAAAATTGGGCGCGAAANGANNNCCACTTTTCGAACCGGCGGGAA
ANNNNNCNTTTACCCCACCGCGAGNNGAGAGAGAGAGAGAGNNGGAGGGG
AACCCCAAGNACTGTTACCCCCACCCCCCCCCCGGGAGAGCAGCGNNCAG
CGCAGCCTATGGGGTGGAGACAAGAGATGCCTGCCTGACACATGGGCTTC
TAGGAGAACTGAGGGACCAACCCGGGCACCAGGAACTTCCCAAGGTCTTT
GTTATTCAGNGGCCCCTCCCCGGAACTAAAGAACCAACAGAAAAGGGAAA
AATCGAACCTATTTTTTTTTTTCAAGCCGGAGCCAACCGGCCGGGGAGCN
CGGGCACGCCCCGCCCAGAGGGGGGACGGNAGGGGGNCCGNNAGNCCAGC
AGGNGGGCCCAAACGGAGACACCAGNAAGGCAAGGAAAGGCAACCNCAAC
CGGGCACGANNCNCGCGNGCGCANANANGGNGGCGGGAAGGGGCGGAAGG
ANCACCCCCCGCACCCACCNANCCCCCACAGGACCCCGACCACAGCGACC
CCCCCAAGCAACGCCCCCAAACAACCCAACCACCCGCGCGCCCCCCACAA
AACCCCCAACACCCCCCAAAGCCCCAACCCCCGCCCAATTTTTTTTTTTT
TAGCACCCCCCAGACCCCCCCCCAATACCCGCCCACCCGGCCACCCCTAG
CACCAAG

ACAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCATGCATTTAACAAGTATTGAGACACTGCTG
TTGGCATCAAGAATACACTGAGCAAAACTGAAGATAACTCTGTATTAAAC
GTACCATGACATTAGGATATTGTGAGAAAAACAGAAAATATGAATAGTAA
ATTTCTAGTGTGTGAATTAAGAAACCCACAGACTCTGGTAAATGATATCA
ACAGTGAGATCGTGGAAACAGTCTCAGTTGGAAGAGTGTGATTCCAAATA
GGGTAAAATGAACATTTCTTGTGGTCCAAGCACTGCACATAGCACTGAGG
AGAATATGGCTGCCACGGGTGCAGTTGGAAGAGTAAGAAGACTTGGGCAT
CTGCCTAGCATGCTTGAGATTCTTGTTAAATCCCCAGCATTTCAGAACAG
TCGAGGGGGTGAGGGGGTGAAAGGAGGATGCTTACTCCGTGATCCCTCCG
CTGGAGCGTACATAGGCCTTTGAGTTCAGTATTAGTTAGTGCACAACTGG
ATCTTAGGATTCTGGATCTCATGGCTGGGTGGAGACGGCGGAAGCAGAGA
GACCGAAAGCAGGGTAAACAGCGAGAAAGAGTAACAACCTGAGGATGACC
TTATCTCTTTTCTAACGGTTTCTGTTCTCGTTCTAAAAAAAGCCCTTCCG
CCGAATTTTACTAGTGGTTTCCTCCCCCTCTGTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_j12.g1 MSMg01no420_j12.g1 CHROMAT_FILE:
MSMg01no420_j12.g1 PHD_FILE: MSMg01no420_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:30 2005
         (246 letters)



>mm_chr7_109834448_109835093
          Length = 646

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatgcatttaacaagtattgagacactgctgttggcatcaagaatacactgagcaaaac 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 446 tcatgcatttaacaagtattgagacactgttgttggcatcaagaatacactgagcaaaac 387

                                                                       
Query: 61  tgaagataactctgtattaaacgtaccatgacattaggatattgtgagaaaaacagaaaa 120
           |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 386 tgaagataactctgtattaaacgtaccacgacattaggatattgtaagaaaaacagaaaa 327

                                                                       
Query: 121 tatgaatagtaaatttctagtgtgtgaattaagaaacccacagactctggtaaatgatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tatgaatagtaaatttctagtgtgtgaattaagaaacccacagactctggtaaatgatat 267

                                                                       
Query: 181 caacagtgagatcgtggaaacagtctcagttggaagagtgtgattccaaatagggtaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caacagtgagatcgtggaaacagtctcagttggaagagtgtgattccaaatagggtaaaa 207

                 
Query: 241 tgaaca 246
           ||||||
Sbjct: 206 tgaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |