Query= MSMg01no422_m08.b1 MSMg01no422_m08.b1 CHROMAT_FILE:
MSMg01no422_m08.b1 PHD_FILE: MSMg01no422_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:17 2005
(481 letters)
>mm_chr7_100737393_100738273
Length = 881
Score = 847 bits (438), Expect = 0.0
Identities = 471/484 (97%), Gaps = 7/484 (1%)
Strand = Plus / Plus
Query: 1 gtaagctttagctgctaggctcaattttttctgtcctgctaaattcttgtttttcctcta 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 201 gtaagctttagctgctaggctcagttttttctgtcctgctaaattcttgtttttcttcta 260
Query: 61 attattatcacatattagagtctaatatgtcatagagactcctctctgcatgtgaccatg 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attactatcacatattagagtctaatatgtcatagagactcctctctgcatgtgaccatg 320
Query: 121 gtctcctttctgctgctccactcaataaagagactggagaggtctggtgaggtggagatg 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctcctttctgctgctgcactcaataaagagactggagaggtctggtgaggtggagatg 380
Query: 181 gggcatggggacatcccttggagatgcggagtgggaaggaggcatggaatggggagtggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggcatggggacatcccttggagatgcggagtgggaaggaggcatggaatggggagtggc 440
Query: 241 tgagggaca--tgt-gttaaaagggatgaagactgaactgtaaaaaagagggaataaaga 297
||||||||| || | |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 tgagggacagatggcg---aaagggatgaagactgaactgtaaaaaa-agggaataaaga 496
Query: 298 ataaaaaaaattagtctggctacaaaggtcatgttcttatcaagcacactggagcatatt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ataaaaaaaattagtctggctacaaaggtcatgttcttatcaagcacactggagcatatt 556
Query: 358 gtctacacaataaagagagaaaagattctctctttattgatcaaatgacccatcatcatg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gtctacacaataaagagagaaaagattctctctttattgatcaaatgacccatcatcatg 616
Query: 418 acatctcacatgtgtcatgttttttctataagtcatttttgattacctccaagctatgta 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 617 acatctcacatgtgtcatgttttttctataagtcatttttgattacctccaagctatgca 676
Query: 478 tttc 481
||||
Sbjct: 677 tttc 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_m08.g1 MSMg01no422_m08.g1 CHROMAT_FILE:
MSMg01no422_m08.g1 PHD_FILE: MSMg01no422_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:18 2005
(281 letters)
>mm_chr7_100866450_100867130
Length = 681
Score = 360 bits (186), Expect = e-104
Identities = 268/324 (82%), Gaps = 50/324 (15%)
Strand = Plus / Minus
Query: 1 ttattggtaaagcatctttgaatttttttcctagatgctcatctctaatttagagctctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ttattggtaaagcatctttgaatttttttcctagatgctcatctctaatttagagctctt 289
Query: 61 tcatccacagaatggtagtttctcctaaaagtacacaacgttttcagggaggataatgct 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 288 tcatccacagaatggtagtttctcctaaaattacacaacgttttcagggaggataatgct 229
Query: 121 tacaggttgttctt-ttattcatacattgataatttttaaaaaaagaatagtttagaaat 179
||||||||||| || |||||||||||||||||||| ||||||| |||||||| ||||
Sbjct: 228 tacaggttgtt-ttgttattcatacattgataatt---aaaaaaa--atagtttaaaaat 175
Query: 180 -----------------------------------------atatatatattaaagttat 198
|||||||||||||||||||
Sbjct: 174 catatatatatatatatatatatatatatatatatatatatatatatatattaaagttat 115
Query: 199 ttagttattttcaaaggtatttattgatttttt-ggaaatgtcttttaaatttgttttca 257
||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||
Sbjct: 114 ttagttattttcaaaggtatttattgatttttttggagatgtctttttaatttgttttca 55
Query: 258 gattactttaaaaaaatctaagcc 281
| ||||||||||| | ||||||||
Sbjct: 54 gcttactttaaaata-tctaagcc 32
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
