BAC Information

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BAC

Clone NameMSMg01-422P17
Chromosome7 (Build37)
Map Location 149,586,638 - 149,587,205
singlet/doubletsinglet
Overlap genenone
Upstream geneTaldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd
Downstream geneSyt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422P17.T7 (MSMg01no422_p17.b1)MSMg01-422P17.TJ (MSMg01no422_p17.g1)
ACCAG517244AG517245
length733801
length of high quality
(start - end)		568 (67 - 634)59 (81 - 139)
definitionCHROMAT_FILE: MSMg01no422_p17.b1 PHD_FILE: MSMg01no422_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:33 2005CHROMAT_FILE: MSMg01no422_p17.g1 PHD_FILE: MSMg01no422_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCCTAA
GGTTTCCCTGAACCCAAATCTGGTGTCAACCGGATTATAACAGGAAACCC
CCAGCTCCCTTCCTCCCAGCTCCCAGCCCTCAGCATCCCTTGGCTCTGGG
CCCAGTCCACCTGCAGAGCAGGCATTAGCCATCGGAGCACTGATGTCACA
GGGTCAGATACACCTCCCAGACCTAGACTTCAGCTCTTATTTGCACCCCG
TGATTACATTCCTATTCTGTTATCCTTGATAATCTCCCACTGTGAGGTCG
GCTGCTTAGGGACATGAATTCCTTGTACAGCTCTAATTCCCAGTCACAGG
GAGCTAACACACACAGGTTGCTGGAGGCTGGGGCATGAACCTCTTTGGGG
GCCACTCTTCTGCCCACCGCCCTCAATCCCTCATTAGTTCTAATTGCTGA
ATAGTTTTCCGGCATGCGTAGGCCGCAGTTGGTTTACTCATTGAACTCTC
TGAGGTCATTTGTTGGGTCCCAGGTTGGGGCCATTACCGGGGAAGCTGCA
GAAGTTTTCACACTCAAGTGTTCTCTGGNGGTTATGGTTTTACTTCTGTA
CACAGAGTGGTGGGGTTGGGGGACACAGTAAAAGCTTAAGAGACTTTTTT
TTATAGCATCCAAGCGGTGTCTACAAAACCCTCCCCCACCTTCCCACCCC
TTTAGTCTGGTAAGGTCGACTCTTAGCCTTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAGCCATTCTGGGCGGAGCCACTCCAGTTAGAAAAAGCCCGGGCTA
GAGGGCCCGAAGCACCGGGTGTGGGAGGGGGGTGGGGGNTNNNNNNTTTT
TTTTTTTGGGGGGGGGGTTGTTTGTGGGTTGTGTTTTTGTTGTTTTTTGT
TTGTTGTTTTGTGTGGTTTGCGGTGTTTTTTGGTGTTTTTTTTTGTGTNT
GNNGGTTTTTTTTTTTGTTTTTTTGGGCCGGTGGAGGGGGGGGGGGGGGG
ATTTGGGTACTTTTGGGGAGGGGGAGTCCCCGGCCGCCCGCTTTTTTTCT
CCCCCCTCTCTCTTCCGGGCTCCTCCTCTTTCCCCCCCCTCCTCCTCTCC
TCCCCCCCCCCCTCCCTCCTTTTTCCCCCTTCTCCTCCCCTTTCCCTCTC
TTCCTCCTCCTTTCTTCTCTCCTCTCCCCTTCTCCCCTTCCCTCCTCCTC
CCTCCTCCCCCCTTTCCCTCTCTCCCTCCCTCCTCTCTCCCTCTTCCTTC
TTTCCTTTTTCCTCCTTTTCCTTCCCCTCCCTTCCTTTCCCCTCCCTCCC
CCTTCTTTCCTCCTTCTTTCTCCTCCTTTCCTCCTCTCCTCTCCCCTCCC
TTCTCCCCCTCCTCTTTCCCCCCTTTTCCTTCCCTCCCTCCTTCCCCCCT
CCCCTCCTTTTTTTCCTTCTCCCCCTCCTGCTCTTCTCCCTCCCCTCCCC
TTTCTTTCTTTCCCCTCCCCCCTTCTTCTCCCTCTCTCTCTTCTCCCTTT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_p17.b1 MSMg01no422_p17.b1 CHROMAT_FILE:
MSMg01no422_p17.b1 PHD_FILE: MSMg01no422_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:33 2005
         (568 letters)



>mm_chr7_149586438_149587405
          Length = 968

 Score = 1069 bits (553), Expect = 0.0
 Identities = 564/568 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatctggtgtcaaccggattataacaggaaacccccagctcccttcctcccagctcccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatctggtgtcaaccggattataacaggaaacccccagctcccttcctcccagctcccag 260

                                                                       
Query: 61  ccctcagcatcccttggctctgggcccagtccacctgcagagcaggcattagccatcgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctcagcatcccttggctctgggcccagtccacctgcagagcaggcattagccatcgga 320

                                                                       
Query: 121 gcactgatgtcacagggtcagatacacctcccagacctagacttcagctcttatttgcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcactgatgtcacagggtcagatacacctcccagacctagacttcagctcttatttgcac 380

                                                                       
Query: 181 cccgtgattacattcctattctgttatccttgataatctcccactgtgaggtcggctgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccgtgattacattcctattctgttatccttgataatctcccactgtgaggtcggctgct 440

                                                                       
Query: 241 tagggacatgaattccttgtacagctctaattcccagtcacagggagctaacacacacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagggacatgaattccttgtacagctctaattcccagtcacagggagctaacacacacag 500

                                                                       
Query: 301 gttgctggaggctggggcatgaacctctttgggggccactcttctgcccaccgccctcaa 360
           ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 gttcctggaggctggggcatgaacctccttgggggccactcttctgcccaccgccctcaa 560

                                                                       
Query: 361 tccctcattagttctaattgctgaatagttttccggcatgcgtaggccgcagttggttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccctcattagttctaattgctgaatagttttccggcatgcgtaggccgcagttggttta 620

                                                                       
Query: 421 ctcattgaactctctgaggtcatttgttgggtcccaggttggggccattaccggggaagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcattgaactctctgaggtcatttgttgggtcccaggttggggccattaccggggaagc 680

                                                                       
Query: 481 tgcagaagttttcacactcaagtgttctctggnggttatggttttacttctgtacacaga 540
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 tgcagaagttttcacactcaagtgttctctgggggttatggttttacttctgtacacaga 740

                                       
Query: 541 gtggtggggttgggggacacagtaaaag 568
           ||||||||||||||||||||||| ||||
Sbjct: 741 gtggtggggttgggggacacagtgaaag 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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