BAC Information

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BAC

Clone NameMSMg01-423D18
Chromosome7 (Build37)
Map Location 135,613,658 - 135,614,002
singlet/doubletsinglet
Overlap genenone
Upstream genePrr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1
Downstream geneBag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144, Ppapdc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423D18.T7 (MSMg01no423_d18.b1)MSMg01-423D18.TJ (MSMg01no423_d18.g1)
ACCAG517438AG517439
length764763
length of high quality
(start - end)
419 (52 - 470)453 (59 - 511)
definitionCHROMAT_FILE: MSMg01no423_d18.b1 PHD_FILE: MSMg01no423_d18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:52 2005CHROMAT_FILE: MSMg01no423_d18.g1 PHD_FILE: MSMg01no423_d18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCAATACGACTCACATTTCGGAGAGGATCCGCGGAATTCCAGCATTACC
TGAGTACTCTGGGCAGCCAGTTTCTAGCCAAATACAGGACCTTTCTGAAG
TCCAAAGAGCCCCCAAGCAATACACTGCCCTCCTCATAACTTAAAGGGTC
TGGGCATCATGTCTTAGAACCCCAAACACTCGGCTCTGTGTTATATCTTC
AGACCGTTCTCCCAAGATGTTGCTGTACTTTGACATGCCAATAAAGACCA
AATACTCATTTGTTGACTCCTGGTTCTTTTCCCCATCATTCCTGGATGTG
GGAGCATTTGATCCCTTTTTCTTAATTAAGCACCTTTTGAAAATTAATTT
GGAGATGTTAATTCAGTACAAGAGAGGTTGGCAGCTTTATGAAAACACTG
GATAATGCCAGAATAAGATGTATGTTCATCCAGTCGGAGACTAAAGAGGA
ATTCGGGGGGGGGGGGGGAGGTCCTTTTTCTCCTTCTCTTCCCTTTCTCT
TTTTTTCCCCTACCCTCTTTTTTCCCTCTCCTTTTTTTTCTTATCCTCTC
CCTTTATTTTCCTTTCATTTCCCTTCTTTTCATTTCCTTCTTTTTTTCTC
CCCCTATTTTTTTCTCCTAATTTTTTTACACCTTTTTATTCCTTTCTCCA
CCTTCCCATTTCTACCTTTTTTCCTTTCCTTCCTTCCCCTTTTCATCCCC
CCTTTTTTTCCCCCTCCCACATTTTTATTTTTTATCCTTTTCTTCATTTT
TTATTACCAATTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXACTCTGTAGATCAGGCTGGCCTCAAACTCAGAAATCCGCCTG
CCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCGACACCACGCCCAGC
GTAAATGCAAATTTTAAAATAAAAATAATCCTACGCAGAACAATGATTTA
ATGTTTTAGGTAAGTTTATGCTTTTGTGTGATCTTAGAGTTACCTTTAGA
TGAATACAGCCTATAGGCCATGGAATGGCCATTTCGCTAGGCTGTCTGTT
TATTTTGCTGATAATTTCCTCTGCTGTGCAGCTTTATAATCTCATATAAT
CTTATTTGTCAGTTTTGGGAATTATATATTTTACTATTGGAATCATTTTC
TTCTTAATTTATGTATTTCTGCTTATGTATATGTACCACATGTATGTAGG
AGCCCTTGGAGATCAGAAGGGAAGTTACAGATACCTGCCATTCCCCTGCT
GGGAACTGACCCTGAGTCCTCTGTAAGGGCAGTAATCACTCCTAACCACA
GAACTCTTTCTCTAACCCCATTGGAATCTTGTTCAGAAAGTCTTTATCTA
TTGCTGTTTATCAAAGTGGTTTGCTCCCGTATCTCCACGGGCTTAAATCT
TACGGTAGGATCCTTGATTTATTTCCACATGGTTTGTCCCCCTTCGTTTT
TTCTCCCCTCCTCCTTCTTATTCTTACCCTTCTTCCTCCACTTTTTCTTC
CACCCCCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_d18.g1 MSMg01no423_d18.g1 CHROMAT_FILE:
MSMg01no423_d18.g1 PHD_FILE: MSMg01no423_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:52 2005
         (453 letters)



>mm_chr7_135613150_135614002
          Length = 853

 Score =  629 bits (325), Expect = 0.0
 Identities = 340/345 (98%)
 Strand = Plus / Minus

                                                                       
Query: 109 aaataaaaataatcctacgcagaacaatgatttaatgttttaggtaagtttatgcttttg 168
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aaataaaaataaccctacgcagaacaatgatttaatgttttaggtaagtttatgcttttg 794

                                                                       
Query: 169 tgtgatcttagagttacctttagatgaatacagcctataggccatggaatggccatttcg 228
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 793 tgtgatcttagagttacctttagatgaatacagcctataggacatggaatggccattccg 734

                                                                       
Query: 229 ctaggctgtctgtttattttgctgataatttcctctgctgtgcagctttataatctcata 288
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ctaggctgtctgtttattctgctgataatttcctctgctgtgcagctttataatctcata 674

                                                                       
Query: 289 taatcttatttgtcagttttgggaattatatattttactattggaatcattttcttctta 348
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 673 taatcttatttgtcagttttgggaattatatattttactattggagtcattttcttctta 614

                                                                       
Query: 349 atttatgtatttctgcttatgtatatgtaccacatgtatgtaggagcccttggagatcag 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 atttatgtatttctgcttatgtatatgtaccacatgtatgtaggagcccttggagatcag 554

                                                        
Query: 409 aagggaagttacagatacctgccattcccctgctgggaactgacc 453
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aagggaagttacagatacctgccattcccctgctgggaactgacc 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)