BAC Information

Click to search

BAC

Clone NameMSMg01-423F20
Chromosome7 (Build37)
Map Location 136,807,658 - 136,808,076
singlet/doubletsinglet
Overlap genenone
Upstream geneInpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144, Ppapdc1a, Brwd2
Downstream geneLOC100043150, Fgfr2, LOC546005, Ate1, LOC100043163, Nsmce4a, Tacc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423F20.T7 (MSMg01no423_f20.b1)MSMg01-423F20.TJ (MSMg01no423_f20.g1)
ACCAG517538AG517539
length793824
length of high quality
(start - end)
419 (54 - 472)82 (54 - 135)
definitionCHROMAT_FILE: MSMg01no423_f20.b1 PHD_FILE: MSMg01no423_f20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:02 2005CHROMAT_FILE: MSMg01no423_f20.g1 PHD_FILE: MSMg01no423_f20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCTATACGACTCACTTTCCGAGAGGATCCGCGGAATTCACTTTTTCCAG
AATAATATACCTGAGGCTAGACAGTCACTGATAAGTCCATGCTTTAAGTC
ACCAGGAAGTCACAAGGTCCAGGAAGTCAGTTCCGGGATTTGTTCTTTTT
CTAGAGAGGGGCCATCTAGGTGTGATTGTGCAATTTTTGTCTGTGATATT
GCACAAGTCCAAAGTCCTTTCTAAGGGCCCAGGGGAGCCCTTATCTTTCT
GGATAATCCTCCTGTCTGCTGCTACTGGCTATAATGAGATACTCTAGCCC
CTTTTGTTTTCCTGCTGCCTCCTGGTCCTGCTGCCTACCCCTGAGGTACA
CCTGCAGCCCTCAGTCTCCTGACCTGGGCTGAACCCAACAGGTGCTGCAG
CCTCTGGCACCGACCACCACTCCACAGCATTCCTGTGTCCCTGTGTCTCT
CAGCTGGTCCAGACTGGCAGCCCCCCTATTTAGCTCTGCCTACCTCAGTA
GAAGCATGCAGCTCAGGCCCGTTCTTTTCCCGGGTTGTGTCTGTTTGCTG
CCCTCCGCGATAACCTGCCTGCCTTAGGGAAACTTCCCTATTAACACAAC
TTTATGCCCCTCTTTATTTTCTTTGCTAGTTTTTTTCCTCTCCTGTTGAA
TTCTTTACCACACCTTACCCAATCATCCACTTTTTTCCCTTGCGCTTCCC
TTCCCTCCATCCCTATCCCCCCTTTTTTCTTCCCTCTCCCTCTTTTTCTT
CACATCACTTTCTTTGCTCTCATTTTTTCTTCTCCCCTTTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTCATAGGACACTGAAAGGGGAGCAGAACCTTGAATAAAGGACTTTCT
GGGGTCAGAAGAGCAGAGGCCATTTACTGAGATGGATAATTAGCTGTGAC
AGTTGAAGTTGAAGCAAGGTTCAAGCCCAAAAAGNAAAAACTACACCCAA
NNNGGGCATTGCCCTAAATTTCGCCCACCCACCTTTATTACTGTTTTCTT
CCTTGGGGAGAGCAACAAACCCCTAACCCNNCCAAAAAAAGANGCTCTTN
NNNTTTTTTTTTATTTTTTTACCCCCTTATTGGTTCCCAAAAAATTTATT
GCTCCCCAAAATTTTAATTGGGNGCGGGTCCAAAANNNNAAAANTCCCGC
CCCATTCAACTATTTTNNNAGTTTTTAATTCTCCCCTGCCCTCTAACAAG
GAGATAAGAAGGAGAGAGAAAAAAGACGAGGGAAGGAGAAAAGATAGACG
AGAAAAACTCTCCNNCTTTTCTCGCCCCCCCCCCCCTGTTTTTTCTTATT
AATTTAGGTTTTTGNTTCCCNCTCCCCCTTCCCCCCCTGTTTGGNNNGGG
GGGGACAATGTTGGGNNNNNNNNNNNNTTTTNTTNNNNTNNNTTNNCCTC
CCCCCCCGGAGGGGCGGAAAATAAAAAAACCCCTTNNNATCCCTTTNNNC
TTCCTTCTTCCCCTTTTCTTTTTTTTNTTTTTTTCCCCCTTTTTCTTTTC
CCCTTCCTTTTTTCCCCCCAACTCCCCCCCGGTGGGGGGGGGGTNTTCTT
CTTTTTTTTTTCCCCAACTATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_f20.b1 MSMg01no423_f20.b1 CHROMAT_FILE:
MSMg01no423_f20.b1 PHD_FILE: MSMg01no423_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:02 2005
         (419 letters)



>mm_chr7_136807458_136808276
          Length = 819

 Score =  756 bits (391), Expect = 0.0
 Identities = 412/423 (97%), Gaps = 8/423 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatatacctgaggctagacagtcactgataagtccatgctttaagtcaccaggaagtcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aatatacctgaggctagacagtcactgataagtccatgctttaagtcaccaggaagtcac 560

                                                                       
Query: 61  aaggtccaggaagtcagttccgggatttgttctttttctagagaggggccatctaggtgt 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaggtcccggaagtcagttccgggatttgttctttttctagagaggggccatctaggtgt 500

                                                                       
Query: 121 gattgtgcaatttttgtctgtgatattgcacaagtccaaagtcctttctaagggcccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gattgtgcaatttttgtctgtgatattgcacaagtccaaagtcctttctaagggcccagg 440

                                                                       
Query: 181 ggagcccttatctttctggataatcctcctgtctgctgctactggctataatgagatact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggagcccttatctttctggataatcctcctgtctgctgctactggctataatgagatact 380

                                                                       
Query: 241 ctagcccc----ttttgttttcctgctgcctcctggtcctgctgcctacccctgaggtac 296
           ||||||||        ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctagccccaggg----gttttcctgctgcctcctggtcctgctgcctacccctgaggtac 324

                                                                       
Query: 297 acctgcagccctcagtctcctgacctgggctgaacccaacaggtgctgcagcctctggca 356
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 323 acctgcagccctcagtctcctgacctgggctgagcccaacaggtgctgcagcctctggca 264

                                                                       
Query: 357 ccgaccaccactccacagcattcctgtgtccctgtgtctctcagctggtccagactggca 416
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccgacctccactccacagcattcctgtgtccctgtgtctctcagctggtccagactggca 204

              
Query: 417 gcc 419
           |||
Sbjct: 203 gcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)