BAC Information

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BAC

Clone NameMSMg01-423I12
Chromosome7 (Build37)
Map Location 105,345,040 - 105,542,083
singlet/doubletdoublet
Overlap geneB3gnt6, Phca, Tsku, LOC100040269
Upstream geneGab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp
Downstream geneGucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir, Wnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423I12.T7 (MSMg01no423_i12.b1)MSMg01-423I12.TJ (MSMg01no423_i12.g1)
ACCAG517665AG517666
length741731
length of high quality
(start - end)
236 (313 - 548)239 (63 - 301)
definitionCHROMAT_FILE: MSMg01no423_i12.b1 PHD_FILE: MSMg01no423_i12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:14 2005CHROMAT_FILE: MSMg01no423_i12.g1 PHD_FILE: MSMg01no423_i12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,345,040 - 105,345,275)(105,541,845 - 105,542,083)
sequence
GGGCGCTAAANGAATCACTTTCAAAAGAGGATCCGCGGAATTCAGTATTC
CCGCCAGAGATGGAAGCGCATGTCTATAATCCCCGACTCAAGGAGGCTGA
GCAGGATGTGAGTTCAGAGCCAGCCTAGGCTGTATAGTGAAACTCAAAGA
GGGCCAGTGAAGGCACTTAGTGGAGTAAGGTGCTTGCCACTAAGCCCAGT
GACCTGAGTTAGCTCCCTGTGATCCACATGGACTCCCATAGACTTCCCTC
AGGCCTTGACATCTGTGCTATGGCATATATATCACAGATAACCTTAAACA
ATATGGTCAATTGTAAATAAGTTTTAAAAACCAAAATGAAAATAATAATA
TAGTACTTGGCAATTCAGTAATGCTAAATTAGTATATGTTAGCTAGTAGG
ACTGTCAAGTGCTAAAGAATGTTCTAGAACATGTGCTCGTCCTCTGTTTT
CAGAGAGTAGCTTGTGAAGCTGGGTGTTACTGGAAGGGACTGTGTCCCAG
CACTTGTGTATTACAGTCCATACAGTGGCCAGCTCGGAATGAGCACCAAG
CGGGTGCTCAGGGCTGAGTGGTAACAGTTAGTCGTCTCACAAGTAGAGAA
TTGTGTGGACTCAGTGGTTCGGTTGATCACCGTTATCTTTTTCTCCGCTG
ATTTCCACCGTTGCTTTCTCCCCGCCCCCCGCTTGTGTCTTTATTTATGA
CCCGTGTTTTCCGTGTCTTTGTTTTTTCCCTTTTTTCTCGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGCTTGGGTCATCAGGCCTGGCTCCCTGTGCATTTCAA
AACAGCATCAGCCTTTTGACTTTCATGAAACCAAATGGAGATAAATGGAG
GATGGACTCTGAGACACCAAAATCTTCCCAGATCTAGAATATTCTGTTTT
ACCACGGCTCCAGATGGAATCTAGCTACCTAAAGAATATTTCTGACACTT
GCTCAGCTCTAGTCCAGACCACACAGGACTGGTTTTCATACTGAGCCCTG
CTTGTTTTCTGGGAGAGTCTTGGCCAGGGAGACTAGAGGATGGAGGTCCT
GCTGCAGGCTCTGGCTCCTTCCATAGGGCCTGCAAAAGGCTTGAGTATAA
CCAGGGAGGTTTGAGCTAGAACAGATTCTAAAGCGCACGCTGCTTTGTTT
CAAACTTTTGCTAGAAGGTGATTTTAGAAGCTAGCTCTATACTCTTTCCC
TAACTCTGAATCACAATTCCATTTTGTCTCTTCTTGTCTACCAGGCTGTG
GGCACCAGAAAATAACGTACAGGCCCTCTTGCGCCTCTCTTGGATACACA
ACACATTGCTTGCTCAGAAATAGTATCCAAGCTTTCTTGTAGTTTCACCA
TGGGCCTGCGGGCGTGGTTTCATATTAATGACCACTATTCTTAACTGGTT
CCCATTTCTGTCTCCCTTTGTTGTCTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_i12.b1 MSMg01no423_i12.b1 CHROMAT_FILE:
MSMg01no423_i12.b1 PHD_FILE: MSMg01no423_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:14 2005
         (236 letters)



>mm_chr7_105344840_105345475
          Length = 636

 Score =  426 bits (220), Expect = e-124
 Identities = 232/236 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaaataagttttaaaaaccaaaatgaaaataataatatagtacttggcaattcagtaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 gtaaataagttttaaaaaccaaaatgaaaataataatatagtacttggcaagtcagtaat 260

                                                                       
Query: 61  gctaaattagtatatgttagctagtaggactgtcaagtgctaaagaatgttctagaacat 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 gctaaattagtatatgttagctagtaggactgtcaggtgctaaagaatgttctagaacat 320

                                                                       
Query: 121 gtgctcgtcctctgttttcagagagtagcttgtgaagctgggtgttactggaagggactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgctcgtcctctgttttcagagagtagcttgtgaagctgggtgttactggaagggactg 380

                                                                   
Query: 181 tgtcccagcacttgtgtattacagtccatacagtggccagctcggaatgagcacca 236
           ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 tgtcctagcacttgtgtattacagtccatacagtgtccagctcggaatgagcacca 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no423_i12.g1 MSMg01no423_i12.g1 CHROMAT_FILE:
MSMg01no423_i12.g1 PHD_FILE: MSMg01no423_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:14 2005
         (239 letters)



>mm_chr7_105541645_105542283
          Length = 639

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcttgggtcatcaggcctggctccctgtgcatttcaaaacagcatcagccttttgactt 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 439 tgcttgggtcatcaggcctggctccctgtgcattccaaaacagcatcagccttttgactt 380

                                                                       
Query: 61  tcatgaaaccaaatggagataaatggaggatggactctgagacaccaaaatcttcccaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tcatgaaaccaaatggagataaatggaggatggactctgagacaccaaaatcttcccaga 320

                                                                       
Query: 121 tctagaatattctgttttaccacggctccagatggaatctagctacctaaagaatatttc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 319 tctagaatattctgttttaccacggctccagatggaatctagctacctaaagaacatttc 260

                                                                      
Query: 181 tgacacttgctcagctctagtccagaccacacaggactggttttcatactgagccctgc 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgacacttgctcagctctagtccagaccacacaggactggttttcatactgagccctgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)